GranCell_mod should match GRANULE_Cell's behaviour
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Description
We have to make sure that the neuroconstruct model which uses the mod files from the original NEURON implementation behaves exactly as the reference model. As of Revision r7, this doesn't appear to be true: I attach a comparison between the two cells obtained by simulating a simple current injection as per the test.py script at 30 deg C.
!attached_image!
History
#1
Updated by Eugenio Piasini about 13 years ago
Updated by - File GranCellSolinasEtAl10_test_rev7_NMDALeak_noTABLEKCa.png added
Revision r8
* Added the NMDA_Leak mechanism
* commented out the TABLE and DEPEND lines in GRANULE_KCA.mod (in the nC project) to mimic the effect of the
h.usetable_GRANULE_KCA = 0
setting in GRANULE_Cell.py.
However, it still doesn't match: see attached graph.
!GranCellSolinasEtAl10_test_rev8_NMDALeak_noTABLEKCa.png!
#2
Updated by Eugenio Piasini about 13 years ago
- File deleted (
GranCellSolinasEtAl10_test_rev7_NMDALeak_noTABLEKCa.png)
#3
Updated by Eugenio Piasini about 13 years ago
#4
Updated by Sergio Solinas about 13 years ago
Updated by 
- File GranuleCellSolinasEtAl10_test_r8.png View added
- !GranuleCellSolinasEtAl10_test_r8.png!
- I disagree with Eugenio simulation results, in my simulations the overlap between test.py and the nC version is remarkable.
#5
Updated by Eugenio Piasini about 13 years ago
- Status changed from New to Resolved
My bad. In my previous simulations, I had left the temperature in test.py at 37 instead of 30. I confirm that rev r8(:63ed761a1024) fixes the issue. I'm going to merge back this fix in the repo's default branch.
#6
Updated by Eugenio Piasini about 13 years ago
- Status changed from Resolved to Closed