Branch
Graphs News feed

root @ development

# Date Author Comment
466fe64e 15 May 2025 16:44 Padraig Gleeson (admin)

Merge pull request #107 from openworm/ow_test_cect4

Refactor to use versions of SpreadsheetDataReader etc. in cect (ConnectomeToolbox)
7583f562 14 May 2025 21:49 Padraig Gleeson (admin)

Merge branch 'development' into ow_test_cect4
69f119d6 14 May 2025 21:48 Padraig Gleeson (admin)

Fix ryuff formatting
aa84657d 14 May 2025 21:27 Padraig Gleeson (admin)

Merge pull request #108 from openworm/experimental

To v0.10.0
9c891e6b 14 May 2025 16:01 Padraig Gleeson (admin)

Merge branch 'master' into experimental

  • master: Update non_omv.yml
95ccad5d 14 May 2025 15:52 Padraig Gleeson (admin)

Merge pull request #105 from openworm/development

Update non_omv.yml
6d6f58b6 06 May 2025 17:18 Padraig Gleeson (admin)

Update non_omv.yml
43c69d7d 14 Apr 2025 15:40 Padraig Gleeson (admin)

Merge branch 'experimental' into ow_test_cect4

  • experimental: To v0.10.0 Fix some links to point to c302 repo To v0.9.3 Resurrect list of cells generation Make sure that list of cells and links to 3D models on the OpenBrain again working Now also works on...
a0ea1c84 11 Apr 2025 22:51 Padraig Gleeson (admin)

To v0.10.0
07efe135 11 Apr 2025 20:20 Padraig Gleeson (admin)

Merge pull request #104 from openworm/development

To v0.9.3; revive page with backers list
de91ebfb 11 Apr 2025 19:33 Padraig Gleeson (admin)

Fix some links to point to c302 repo
1ef66f1f 11 Apr 2025 19:11 Padraig Gleeson (admin)

Merge pull request #102 from kant2002/kant/resurrect-backers

Resurrect list of cells generation
bf5650f9 11 Apr 2025 18:59 Padraig Gleeson (admin)

To v0.9.3
2a827b2f 11 Apr 2025 13:58 Padraig Gleeson (admin)

Merge branch 'development' into ow_test_cect3

  • development: Update README.md
6adcbe75 11 Apr 2025 13:57 Padraig Gleeson (admin)

Merge branch 'master' into development

  • master: Update README.md
6692f0a4 10 Apr 2025 12:19 Andrii Kurdiumov

Resurrect list of cells generation
Make sure that list of cells and links to 3D models on the OpenBrain again working
Now also works on Windows
4d9d4a31 08 Apr 2025 22:19 Padraig Gleeson (admin)

Merge pull request #101 from openworm/test-readme

Update README.md
20f802e6 08 Apr 2025 22:11 Padraig Gleeson (admin)

Update README.md
590a5949 24 Feb 2025 23:19 Padraig Gleeson (admin)

Renamed cell x to w2d
9d3bbb66 21 Feb 2025 22:18 Padraig Gleeson (admin)

Require most recent pyneuroml
d2447c5d 11 Feb 2025 21:53 Padraig Gleeson (admin)

Merge branch 'ow_test_cect3' of github.com:openworm/c302 into ow_test_cect3

  • 'ow_test_cect3' of github.com:openworm/c302: Updated cellX
c14551a2 11 Feb 2025 21:52 Padraig Gleeson (admin)

Merge branch 'ow_test_worm2d' into ow_test_cect3

  • ow_test_worm2d: Improve canonical
412da3f7 11 Feb 2025 21:46 Padraig Gleeson (admin)

Improve canonical
52496ba2 11 Feb 2025 21:10 Padraig Gleeson (admin)

Updated cellX
080ac5a2 10 Feb 2025 23:43 Padraig Gleeson (admin)

Update cust syn
3c90b98f 07 Feb 2025 17:57 Padraig Gleeson (admin)

Works on NEURON
458646d8 06 Feb 2025 20:25 Padraig Gleeson (admin)

Move NEURON_HOME in test
3463e86e 06 Feb 2025 19:49 Padraig Gleeson (admin)

Fix NEURON_HOME
fef65dde 06 Feb 2025 18:23 Padraig Gleeson (admin)

Add lower limit on cect
2eb05592 05 Feb 2025 19:07 Padraig Gleeson (admin)

Intermediate update to cellX
f054f363 04 Feb 2025 18:06 Padraig Gleeson (admin)

Genersted files to v0.2.4
1976d2b6 29 Jan 2025 23:01 Padraig Gleeson (admin)

Fix synapse
9aefe973 24 Jan 2025 20:28 Padraig Gleeson (admin)

Fix outputSynapse
856972bf 22 Jan 2025 20:21 Padraig Gleeson (admin)

Merge branch 'ow_test_worm2d' into ow_test_cect3
73d0ef2a 22 Jan 2025 20:20 Padraig Gleeson (admin)

Minor test tweak
fe494e9f 21 Jan 2025 21:08 Padraig Gleeson (admin)

Applied ruff formatting
a6d1eb47 21 Jan 2025 20:43 Padraig Gleeson (admin)

To v0.10.0
b27aa23b 21 Jan 2025 19:30 Padraig Gleeson (admin)

Merge pull request #99 from openworm/development

To v0.9.1
c36321a9 21 Jan 2025 18:50 Padraig Gleeson (admin)

Merge branch 'development' into ow_test_cect3
25ab227d 21 Jan 2025 18:46 Padraig Gleeson (admin)

Merge pull request #98 from openworm/ow_test_worm2d

Update x nmllite model to have bias/gain params
65d3899f 16 Jan 2025 22:58 Padraig Gleeson (admin)

Better testing of parameter sweep functionality
5ef65c4b 16 Jan 2025 21:14 Padraig Gleeson (admin)

Update x nmllite model to have bias/gain params
332a58a0 16 Jan 2025 00:07 Padraig Gleeson (admin)

Test with cect.UpdatedSpreadsheetDataReader2
457fa779 15 Jan 2025 17:03 Padraig Gleeson (admin)

Using cect.SpreadsheetDataReader as default
5ceb02d9 15 Jan 2025 14:47 Padraig Gleeson (admin)

Centralise definition of data readers
2a52e417 15 Jan 2025 14:14 Padraig Gleeson (admin)

Initial test with cect/Connectome toolbox
bc9c12ac 15 Jan 2025 00:39 Padraig Gleeson (admin)

Merge pull request #97 from openworm/ow_test_ruff

To v0.9.1 & more ruff fixes
d7c02ca4 14 Jan 2025 18:19 Padraig Gleeson (admin)

More to v0.9.1
87a2490a 14 Jan 2025 17:53 Padraig Gleeson (admin)

To v0.9.1
11368466 14 Jan 2025 17:37 Padraig Gleeson (admin)

Install ruff
a0a53e75 14 Jan 2025 17:20 Padraig Gleeson (admin)

Regenerated images
1777e6f0 14 Jan 2025 15:32 Padraig Gleeson (admin)

More ruff inspired fixes
ee1f681d 14 Jan 2025 14:59 Padraig Gleeson (admin)

Merge pull request #96 from openworm/development

To v0.9.0
8aa97bbb 14 Jan 2025 14:23 Padraig Gleeson (admin)

Merge pull request #95 from openworm/ow_test_ruff

To v0.9.0
3aa642a2 14 Jan 2025 01:43 Padraig Gleeson (admin)

To v0.9.0
3fd65ccf 14 Jan 2025 00:50 Padraig Gleeson (admin)

Regenerated nml & lems
0d9e39fd 14 Jan 2025 00:46 Padraig Gleeson (admin)

Merge branch 'development' into ow_test_ruff
9a569588 14 Jan 2025 00:45 Padraig Gleeson (admin)

Merge branch 'ow_test_worm2d' into ow_test_ruff
a7336112 14 Jan 2025 00:05 Padraig Gleeson (admin)

Merge pull request #93 from openworm/ow_test_ruff

Initial ruff formatting for development
6a7f6691 13 Jan 2025 23:51 Padraig Gleeson (admin)

Testing NeuroMLlite examples
bc94e959 13 Jan 2025 23:32 Padraig Gleeson (admin)

Merge branch 'development' into ow_test_ruff
14fea6aa 13 Jan 2025 16:42 Padraig Gleeson (admin)

Merge pull request #92 from openworm/ow_test_worm2d

Use dimensional membrane potential etc
ed4d58ba 13 Jan 2025 14:55 Padraig Gleeson (admin)

Use dimensional membrane potential etc
0e947391 09 Jan 2025 23:29 Padraig Gleeson (admin)

Improved cellx/worm2d example
68a58347 09 Jan 2025 23:13 Padraig Gleeson (admin)

Merge pull request #91 from openworm/ow_test_worm2d

Initial cell definition for worm2d cell model
84e587aa 09 Jan 2025 21:16 Padraig Gleeson (admin)

Fixing readers
c85301be 09 Jan 2025 21:09 Padraig Gleeson (admin)

Some more ruff fixes
284d7356 09 Jan 2025 20:55 Padraig Gleeson (admin)

Just ruff format
7a938786 09 Jan 2025 20:33 Padraig Gleeson (admin)

Initial cell definition for worm2d cell model
8f619b82 09 Jan 2025 14:51 Padraig Gleeson (admin)

Merge pull request #89 from openworm/development

Fix GHA tests
9af60bda 08 Jan 2025 23:18 Padraig Gleeson (admin)

Merge pull request #87 from nanoman657/ci/upgrade-omv-test-python-version

Continuous Integration: Replace 3.7 in CI Workflow Python Versions
e6c22591 08 Jan 2025 23:13 Padraig Gleeson (admin)

macos-12 -> macos-13
7b8c85bc 26 Dec 2024 03:21 nanoman657

ci: replace 3.7 in python versions
9af4f4bb 02 Dec 2024 20:04 Padraig Gleeson (admin)

Merge pull request #84 from openworm/development

Add LeakConductance.channel.nml
9dc58ed0 25 Oct 2024 21:59 Padraig Gleeson (admin)

Add LeakConductance.channel.nml
9555bc99 29 Aug 2024 21:58 Padraig Gleeson (admin)

Merge pull request #82 from openworm/development

To v0.8.1; apply black formatting to python
44feb88e 29 Aug 2024 19:58 Padraig Gleeson (admin)

To v0.8.1; apply black formatting to python
bb8d0fb0 29 Aug 2024 19:42 Padraig Gleeson (admin)

Merge pull request #81 from openworm/development

Add action for push to pypi on new release
ca0166cd 29 Aug 2024 19:40 Padraig Gleeson (admin)

Add action for push to pypi on new release
81b229a2 29 Aug 2024 19:17 Padraig Gleeson (admin)

Merge pull request #80 from openworm/development

Allows c302 to be fully used without owmeta installed...
aaeed7ec 29 Aug 2024 19:05 Padraig Gleeson (admin)

Merge pull request #79 from openworm/experimental

Ensure tests run if no owmeta installed...
b44bea88 29 Aug 2024 18:36 Padraig Gleeson (admin)

Fix finding owmeta cached data
60e32444 29 Aug 2024 18:29 Padraig Gleeson (admin)

Using cached info if owmeta not found
3a233d51 29 Aug 2024 18:02 Padraig Gleeson (admin)

Tweak cached owmeta info
d56dcf13 29 Aug 2024 17:53 Padraig Gleeson (admin)

Merge branch 'experimental' of github.com:openworm/c302 into experimental
bd28eaf1 29 Aug 2024 14:16 Padraig Gleeson (admin)

Caching owmeta info on cells
6dd6ab83 28 Aug 2024 23:13 Padraig Gleeson (admin)

Merge branch 'experimental' of github.com:openworm/c302 into experimental
f44c1ab6 28 Aug 2024 23:10 Padraig Gleeson (admin)

Updated select figs on linux
3e31bbf0 28 Aug 2024 22:53 Padraig Gleeson (admin)

Minor tweaks
c062d3c8 28 Aug 2024 21:52 Padraig Gleeson (admin)

Fix utils script for no owmeta
8684c05f 26 Jun 2024 21:02 Padraig Gleeson (admin)

Don't test owmeta on py3.11
917f3cc9 26 Jun 2024 20:49 Padraig Gleeson (admin)

Include install in test...
73128855 26 Jun 2024 20:44 Padraig Gleeson (admin)

Initial test of removing owmeta...
d6788cfc 25 Jun 2024 22:35 Padraig Gleeson (admin)

Merge branch 'master' into experimental
a0588600 25 Jun 2024 22:33 Padraig Gleeson (admin)

Merge pull request #77 from openworm/development

Regenerated nml files with latest nml libraries
4e12f47c 25 Jun 2024 19:40 Padraig Gleeson (admin)

Readme tweaks
4f3587aa 25 Jun 2024 19:32 Padraig Gleeson (admin)

Merge pull request #78 from KaanS139/development

Windows setup instructions
ba0218a1 25 Jun 2024 18:30 KaanS139

Delete Untitled.ipynb
63dcc4fe 25 Jun 2024 18:21 KaanS139

Windows additions
ea8607a2 24 Jun 2024 23:20 Padraig Gleeson (admin)

Regenerated nml files with latest libraries