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# Date Author Comment
9c891e6b 14 May 2025 16:01 Padraig Gleeson (admin)

Merge branch 'master' into experimental

  • master: Update non_omv.yml
95ccad5d 14 May 2025 15:52 Padraig Gleeson (admin)

Merge pull request #105 from openworm/development

Update non_omv.yml
6d6f58b6 06 May 2025 17:18 Padraig Gleeson (admin)

Update non_omv.yml
a0ea1c84 11 Apr 2025 22:51 Padraig Gleeson (admin)

To v0.10.0
07efe135 11 Apr 2025 20:20 Padraig Gleeson (admin)

Merge pull request #104 from openworm/development

To v0.9.3; revive page with backers list
de91ebfb 11 Apr 2025 19:33 Padraig Gleeson (admin)

Fix some links to point to c302 repo
1ef66f1f 11 Apr 2025 19:11 Padraig Gleeson (admin)

Merge pull request #102 from kant2002/kant/resurrect-backers

Resurrect list of cells generation
bf5650f9 11 Apr 2025 18:59 Padraig Gleeson (admin)

To v0.9.3
6adcbe75 11 Apr 2025 13:57 Padraig Gleeson (admin)

Merge branch 'master' into development

  • master: Update README.md
6692f0a4 10 Apr 2025 12:19 Andrii Kurdiumov

Resurrect list of cells generation
Make sure that list of cells and links to 3D models on the OpenBrain again working
Now also works on Windows
4d9d4a31 08 Apr 2025 22:19 Padraig Gleeson (admin)

Merge pull request #101 from openworm/test-readme

Update README.md
20f802e6 08 Apr 2025 22:11 Padraig Gleeson (admin)

Update README.md
73d0ef2a 22 Jan 2025 20:20 Padraig Gleeson (admin)

Minor test tweak
fe494e9f 21 Jan 2025 21:08 Padraig Gleeson (admin)

Applied ruff formatting
b27aa23b 21 Jan 2025 19:30 Padraig Gleeson (admin)

Merge pull request #99 from openworm/development

To v0.9.1
25ab227d 21 Jan 2025 18:46 Padraig Gleeson (admin)

Merge pull request #98 from openworm/ow_test_worm2d

Update x nmllite model to have bias/gain params
65d3899f 16 Jan 2025 22:58 Padraig Gleeson (admin)

Better testing of parameter sweep functionality
5ef65c4b 16 Jan 2025 21:14 Padraig Gleeson (admin)

Update x nmllite model to have bias/gain params
bc9c12ac 15 Jan 2025 00:39 Padraig Gleeson (admin)

Merge pull request #97 from openworm/ow_test_ruff

To v0.9.1 & more ruff fixes
d7c02ca4 14 Jan 2025 18:19 Padraig Gleeson (admin)

More to v0.9.1
87a2490a 14 Jan 2025 17:53 Padraig Gleeson (admin)

To v0.9.1
11368466 14 Jan 2025 17:37 Padraig Gleeson (admin)

Install ruff
a0a53e75 14 Jan 2025 17:20 Padraig Gleeson (admin)

Regenerated images
1777e6f0 14 Jan 2025 15:32 Padraig Gleeson (admin)

More ruff inspired fixes
ee1f681d 14 Jan 2025 14:59 Padraig Gleeson (admin)

Merge pull request #96 from openworm/development

To v0.9.0
8aa97bbb 14 Jan 2025 14:23 Padraig Gleeson (admin)

Merge pull request #95 from openworm/ow_test_ruff

To v0.9.0
3aa642a2 14 Jan 2025 01:43 Padraig Gleeson (admin)

To v0.9.0
3fd65ccf 14 Jan 2025 00:50 Padraig Gleeson (admin)

Regenerated nml & lems
0d9e39fd 14 Jan 2025 00:46 Padraig Gleeson (admin)

Merge branch 'development' into ow_test_ruff
9a569588 14 Jan 2025 00:45 Padraig Gleeson (admin)

Merge branch 'ow_test_worm2d' into ow_test_ruff
a7336112 14 Jan 2025 00:05 Padraig Gleeson (admin)

Merge pull request #93 from openworm/ow_test_ruff

Initial ruff formatting for development
6a7f6691 13 Jan 2025 23:51 Padraig Gleeson (admin)

Testing NeuroMLlite examples
bc94e959 13 Jan 2025 23:32 Padraig Gleeson (admin)

Merge branch 'development' into ow_test_ruff
14fea6aa 13 Jan 2025 16:42 Padraig Gleeson (admin)

Merge pull request #92 from openworm/ow_test_worm2d

Use dimensional membrane potential etc
ed4d58ba 13 Jan 2025 14:55 Padraig Gleeson (admin)

Use dimensional membrane potential etc
0e947391 09 Jan 2025 23:29 Padraig Gleeson (admin)

Improved cellx/worm2d example
68a58347 09 Jan 2025 23:13 Padraig Gleeson (admin)

Merge pull request #91 from openworm/ow_test_worm2d

Initial cell definition for worm2d cell model
84e587aa 09 Jan 2025 21:16 Padraig Gleeson (admin)

Fixing readers
c85301be 09 Jan 2025 21:09 Padraig Gleeson (admin)

Some more ruff fixes
284d7356 09 Jan 2025 20:55 Padraig Gleeson (admin)

Just ruff format
7a938786 09 Jan 2025 20:33 Padraig Gleeson (admin)

Initial cell definition for worm2d cell model
8f619b82 09 Jan 2025 14:51 Padraig Gleeson (admin)

Merge pull request #89 from openworm/development

Fix GHA tests
9af60bda 08 Jan 2025 23:18 Padraig Gleeson (admin)

Merge pull request #87 from nanoman657/ci/upgrade-omv-test-python-version

Continuous Integration: Replace 3.7 in CI Workflow Python Versions
e6c22591 08 Jan 2025 23:13 Padraig Gleeson (admin)

macos-12 -> macos-13
7b8c85bc 26 Dec 2024 03:21 nanoman657

ci: replace 3.7 in python versions
9af4f4bb 02 Dec 2024 20:04 Padraig Gleeson (admin)

Merge pull request #84 from openworm/development

Add LeakConductance.channel.nml
9dc58ed0 25 Oct 2024 21:59 Padraig Gleeson (admin)

Add LeakConductance.channel.nml
9555bc99 29 Aug 2024 21:58 Padraig Gleeson (admin)

Merge pull request #82 from openworm/development

To v0.8.1; apply black formatting to python
44feb88e 29 Aug 2024 19:58 Padraig Gleeson (admin)

To v0.8.1; apply black formatting to python
bb8d0fb0 29 Aug 2024 19:42 Padraig Gleeson (admin)

Merge pull request #81 from openworm/development

Add action for push to pypi on new release
ca0166cd 29 Aug 2024 19:40 Padraig Gleeson (admin)

Add action for push to pypi on new release
81b229a2 29 Aug 2024 19:17 Padraig Gleeson (admin)

Merge pull request #80 from openworm/development

Allows c302 to be fully used without owmeta installed...
aaeed7ec 29 Aug 2024 19:05 Padraig Gleeson (admin)

Merge pull request #79 from openworm/experimental

Ensure tests run if no owmeta installed...
b44bea88 29 Aug 2024 18:36 Padraig Gleeson (admin)

Fix finding owmeta cached data
60e32444 29 Aug 2024 18:29 Padraig Gleeson (admin)

Using cached info if owmeta not found
3a233d51 29 Aug 2024 18:02 Padraig Gleeson (admin)

Tweak cached owmeta info
d56dcf13 29 Aug 2024 17:53 Padraig Gleeson (admin)

Merge branch 'experimental' of github.com:openworm/c302 into experimental
bd28eaf1 29 Aug 2024 14:16 Padraig Gleeson (admin)

Caching owmeta info on cells
6dd6ab83 28 Aug 2024 23:13 Padraig Gleeson (admin)

Merge branch 'experimental' of github.com:openworm/c302 into experimental
f44c1ab6 28 Aug 2024 23:10 Padraig Gleeson (admin)

Updated select figs on linux
3e31bbf0 28 Aug 2024 22:53 Padraig Gleeson (admin)

Minor tweaks
c062d3c8 28 Aug 2024 21:52 Padraig Gleeson (admin)

Fix utils script for no owmeta
8684c05f 26 Jun 2024 21:02 Padraig Gleeson (admin)

Don't test owmeta on py3.11
917f3cc9 26 Jun 2024 20:49 Padraig Gleeson (admin)

Include install in test...
73128855 26 Jun 2024 20:44 Padraig Gleeson (admin)

Initial test of removing owmeta...
d6788cfc 25 Jun 2024 22:35 Padraig Gleeson (admin)

Merge branch 'master' into experimental
a0588600 25 Jun 2024 22:33 Padraig Gleeson (admin)

Merge pull request #77 from openworm/development

Regenerated nml files with latest nml libraries
4e12f47c 25 Jun 2024 19:40 Padraig Gleeson (admin)

Readme tweaks
4f3587aa 25 Jun 2024 19:32 Padraig Gleeson (admin)

Merge pull request #78 from KaanS139/development

Windows setup instructions
ba0218a1 25 Jun 2024 18:30 KaanS139

Delete Untitled.ipynb
63dcc4fe 25 Jun 2024 18:21 KaanS139

Windows additions
ea8607a2 24 Jun 2024 23:20 Padraig Gleeson (admin)

Regenerated nml files with latest libraries
cacdd584 24 Jun 2024 21:57 KaanS139

Update README.md

More specific instructions to Mac and Linux
cbc0f306 24 Jun 2024 19:01 KaanS139

Installation guide

Removed dead link to Travis-CI Script and replaced with link to the workflow ci.yml
1b076b7c 20 May 2024 15:46 Padraig Gleeson (admin)

Merge branch 'experimental' of github.com:openworm/c302 into experimental
e9077b9e 14 May 2024 15:25 Padraig Gleeson (admin)

Merge pull request #75 from openworm/ow_testcolours

More color options in conn matrices & test on mac
1f3e776a 08 May 2024 22:47 Padraig Gleeson (admin)

Remove py3.11, owmeta not py3.11 compativble..
59d29b21 08 May 2024 22:03 Padraig Gleeson (admin)

Install HDF5 for pytables on macos-latest
ecd01284 08 May 2024 21:29 Padraig Gleeson (admin)

Test on mac too
b25de47d 08 May 2024 21:29 Padraig Gleeson (admin)

More options on colours of conn matrix
07871e67 02 May 2024 21:59 Padraig Gleeson (admin)

Merge pull request #74 from openworm/master

Latets master
dd7f4ad6 05 Mar 2024 16:36 Padraig Gleeson (admin)

Merge pull request #73 from openworm/development

Many updated readers
773faf4b 29 Feb 2024 16:09 Padraig Gleeson (admin)

Rename
a3f50a4a 29 Feb 2024 16:07 Padraig Gleeson (admin)

Flip order pre/post -> post/pre in WormNeuroReader
fee6bf92 28 Feb 2024 00:14 Padraig Gleeson (admin)

Added readmes for matrices
459cf414 27 Feb 2024 22:30 Padraig Gleeson (admin)

Improved reading of cook
028dc64c 27 Feb 2024 21:38 Padraig Gleeson (admin)

More work on Cook...
87ae2a83 27 Feb 2024 21:17 Padraig Gleeson (admin)

Initial version cook reader
39121e5f 23 Feb 2024 17:31 Padraig Gleeson (admin)

Merge pull request #72 from openworm/test2

Updated notebook
8d5b2e8f 23 Feb 2024 17:22 Padraig Gleeson (admin)

Created helper class ConnectomeReader for common methods/classes

Consolidated WitvlietDataReader into a single class
29070b63 23 Feb 2024 16:03 Padraig Gleeson (admin)

Adding individual reader classes for white & witvliet
9247be7c 23 Feb 2024 14:56 Padraig Gleeson (admin)

Updated spreadsheet
0c85e8b2 23 Feb 2024 00:04 Padraig Gleeson (admin)

Merge branch 'development' into test2
82425973 23 Feb 2024 00:01 Padraig Gleeson (admin)

Merge pull request #71 from yasinthanvickneswaran/master

test white
5f119dc3 22 Feb 2024 21:14 yasinthanvickneswaran

WhiteDataReader
68285a41 22 Feb 2024 16:23 Padraig Gleeson (admin)

Improved plotting of matrices and added to Comparison notebook
3dbf9c81 22 Feb 2024 05:22 yasinthanvickneswaran

WhiteDataReader
8bbe6661 22 Feb 2024 01:24 yasinthanvickneswaran

WhiteDataReader
f47b5a12 21 Feb 2024 23:09 yasinthanvickneswaran

Add files via upload
4e4bbaf9 21 Feb 2024 23:07 yasinthanvickneswaran

Merge branch 'master' of https://github.com/yasinthanvickneswaran/c302