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# Date Author Comment
20f802e6 08 Apr 2025 22:11 Padraig Gleeson (admin)

Update README.md
b27aa23b 21 Jan 2025 19:30 Padraig Gleeson (admin)

Merge pull request #99 from openworm/development

To v0.9.1
25ab227d 21 Jan 2025 18:46 Padraig Gleeson (admin)

Merge pull request #98 from openworm/ow_test_worm2d

Update x nmllite model to have bias/gain params
65d3899f 16 Jan 2025 22:58 Padraig Gleeson (admin)

Better testing of parameter sweep functionality
5ef65c4b 16 Jan 2025 21:14 Padraig Gleeson (admin)

Update x nmllite model to have bias/gain params
bc9c12ac 15 Jan 2025 00:39 Padraig Gleeson (admin)

Merge pull request #97 from openworm/ow_test_ruff

To v0.9.1 & more ruff fixes
d7c02ca4 14 Jan 2025 18:19 Padraig Gleeson (admin)

More to v0.9.1
87a2490a 14 Jan 2025 17:53 Padraig Gleeson (admin)

To v0.9.1
11368466 14 Jan 2025 17:37 Padraig Gleeson (admin)

Install ruff
a0a53e75 14 Jan 2025 17:20 Padraig Gleeson (admin)

Regenerated images
1777e6f0 14 Jan 2025 15:32 Padraig Gleeson (admin)

More ruff inspired fixes
ee1f681d 14 Jan 2025 14:59 Padraig Gleeson (admin)

Merge pull request #96 from openworm/development

To v0.9.0
8aa97bbb 14 Jan 2025 14:23 Padraig Gleeson (admin)

Merge pull request #95 from openworm/ow_test_ruff

To v0.9.0
3aa642a2 14 Jan 2025 01:43 Padraig Gleeson (admin)

To v0.9.0
3fd65ccf 14 Jan 2025 00:50 Padraig Gleeson (admin)

Regenerated nml & lems
0d9e39fd 14 Jan 2025 00:46 Padraig Gleeson (admin)

Merge branch 'development' into ow_test_ruff
9a569588 14 Jan 2025 00:45 Padraig Gleeson (admin)

Merge branch 'ow_test_worm2d' into ow_test_ruff
a7336112 14 Jan 2025 00:05 Padraig Gleeson (admin)

Merge pull request #93 from openworm/ow_test_ruff

Initial ruff formatting for development
6a7f6691 13 Jan 2025 23:51 Padraig Gleeson (admin)

Testing NeuroMLlite examples
bc94e959 13 Jan 2025 23:32 Padraig Gleeson (admin)

Merge branch 'development' into ow_test_ruff
14fea6aa 13 Jan 2025 16:42 Padraig Gleeson (admin)

Merge pull request #92 from openworm/ow_test_worm2d

Use dimensional membrane potential etc
ed4d58ba 13 Jan 2025 14:55 Padraig Gleeson (admin)

Use dimensional membrane potential etc
0e947391 09 Jan 2025 23:29 Padraig Gleeson (admin)

Improved cellx/worm2d example
68a58347 09 Jan 2025 23:13 Padraig Gleeson (admin)

Merge pull request #91 from openworm/ow_test_worm2d

Initial cell definition for worm2d cell model
84e587aa 09 Jan 2025 21:16 Padraig Gleeson (admin)

Fixing readers
c85301be 09 Jan 2025 21:09 Padraig Gleeson (admin)

Some more ruff fixes
284d7356 09 Jan 2025 20:55 Padraig Gleeson (admin)

Just ruff format
7a938786 09 Jan 2025 20:33 Padraig Gleeson (admin)

Initial cell definition for worm2d cell model
8f619b82 09 Jan 2025 14:51 Padraig Gleeson (admin)

Merge pull request #89 from openworm/development

Fix GHA tests
9af60bda 08 Jan 2025 23:18 Padraig Gleeson (admin)

Merge pull request #87 from nanoman657/ci/upgrade-omv-test-python-version

Continuous Integration: Replace 3.7 in CI Workflow Python Versions
e6c22591 08 Jan 2025 23:13 Padraig Gleeson (admin)

macos-12 -> macos-13
7b8c85bc 26 Dec 2024 03:21 nanoman657

ci: replace 3.7 in python versions
9af4f4bb 02 Dec 2024 20:04 Padraig Gleeson (admin)

Merge pull request #84 from openworm/development

Add LeakConductance.channel.nml
9dc58ed0 25 Oct 2024 21:59 Padraig Gleeson (admin)

Add LeakConductance.channel.nml
9555bc99 29 Aug 2024 21:58 Padraig Gleeson (admin)

Merge pull request #82 from openworm/development

To v0.8.1; apply black formatting to python
44feb88e 29 Aug 2024 19:58 Padraig Gleeson (admin)

To v0.8.1; apply black formatting to python
bb8d0fb0 29 Aug 2024 19:42 Padraig Gleeson (admin)

Merge pull request #81 from openworm/development

Add action for push to pypi on new release
ca0166cd 29 Aug 2024 19:40 Padraig Gleeson (admin)

Add action for push to pypi on new release
81b229a2 29 Aug 2024 19:17 Padraig Gleeson (admin)

Merge pull request #80 from openworm/development

Allows c302 to be fully used without owmeta installed...
aaeed7ec 29 Aug 2024 19:05 Padraig Gleeson (admin)

Merge pull request #79 from openworm/experimental

Ensure tests run if no owmeta installed...
b44bea88 29 Aug 2024 18:36 Padraig Gleeson (admin)

Fix finding owmeta cached data
60e32444 29 Aug 2024 18:29 Padraig Gleeson (admin)

Using cached info if owmeta not found
3a233d51 29 Aug 2024 18:02 Padraig Gleeson (admin)

Tweak cached owmeta info
d56dcf13 29 Aug 2024 17:53 Padraig Gleeson (admin)

Merge branch 'experimental' of github.com:openworm/c302 into experimental
bd28eaf1 29 Aug 2024 14:16 Padraig Gleeson (admin)

Caching owmeta info on cells
6dd6ab83 28 Aug 2024 23:13 Padraig Gleeson (admin)

Merge branch 'experimental' of github.com:openworm/c302 into experimental
f44c1ab6 28 Aug 2024 23:10 Padraig Gleeson (admin)

Updated select figs on linux
3e31bbf0 28 Aug 2024 22:53 Padraig Gleeson (admin)

Minor tweaks
c062d3c8 28 Aug 2024 21:52 Padraig Gleeson (admin)

Fix utils script for no owmeta
8684c05f 26 Jun 2024 21:02 Padraig Gleeson (admin)

Don't test owmeta on py3.11
917f3cc9 26 Jun 2024 20:49 Padraig Gleeson (admin)

Include install in test...
73128855 26 Jun 2024 20:44 Padraig Gleeson (admin)

Initial test of removing owmeta...
d6788cfc 25 Jun 2024 22:35 Padraig Gleeson (admin)

Merge branch 'master' into experimental
a0588600 25 Jun 2024 22:33 Padraig Gleeson (admin)

Merge pull request #77 from openworm/development

Regenerated nml files with latest nml libraries
4e12f47c 25 Jun 2024 19:40 Padraig Gleeson (admin)

Readme tweaks
4f3587aa 25 Jun 2024 19:32 Padraig Gleeson (admin)

Merge pull request #78 from KaanS139/development

Windows setup instructions
ba0218a1 25 Jun 2024 18:30 KaanS139

Delete Untitled.ipynb
63dcc4fe 25 Jun 2024 18:21 KaanS139

Windows additions
ea8607a2 24 Jun 2024 23:20 Padraig Gleeson (admin)

Regenerated nml files with latest libraries
cacdd584 24 Jun 2024 21:57 KaanS139

Update README.md

More specific instructions to Mac and Linux
cbc0f306 24 Jun 2024 19:01 KaanS139

Installation guide

Removed dead link to Travis-CI Script and replaced with link to the workflow ci.yml
1b076b7c 20 May 2024 15:46 Padraig Gleeson (admin)

Merge branch 'experimental' of github.com:openworm/c302 into experimental
e9077b9e 14 May 2024 15:25 Padraig Gleeson (admin)

Merge pull request #75 from openworm/ow_testcolours

More color options in conn matrices & test on mac
1f3e776a 08 May 2024 22:47 Padraig Gleeson (admin)

Remove py3.11, owmeta not py3.11 compativble..
59d29b21 08 May 2024 22:03 Padraig Gleeson (admin)

Install HDF5 for pytables on macos-latest
ecd01284 08 May 2024 21:29 Padraig Gleeson (admin)

Test on mac too
b25de47d 08 May 2024 21:29 Padraig Gleeson (admin)

More options on colours of conn matrix
07871e67 02 May 2024 21:59 Padraig Gleeson (admin)

Merge pull request #74 from openworm/master

Latets master
dd7f4ad6 05 Mar 2024 16:36 Padraig Gleeson (admin)

Merge pull request #73 from openworm/development

Many updated readers
773faf4b 29 Feb 2024 16:09 Padraig Gleeson (admin)

Rename
a3f50a4a 29 Feb 2024 16:07 Padraig Gleeson (admin)

Flip order pre/post -> post/pre in WormNeuroReader
fee6bf92 28 Feb 2024 00:14 Padraig Gleeson (admin)

Added readmes for matrices
459cf414 27 Feb 2024 22:30 Padraig Gleeson (admin)

Improved reading of cook
028dc64c 27 Feb 2024 21:38 Padraig Gleeson (admin)

More work on Cook...
87ae2a83 27 Feb 2024 21:17 Padraig Gleeson (admin)

Initial version cook reader
39121e5f 23 Feb 2024 17:31 Padraig Gleeson (admin)

Merge pull request #72 from openworm/test2

Updated notebook
8d5b2e8f 23 Feb 2024 17:22 Padraig Gleeson (admin)

Created helper class ConnectomeReader for common methods/classes

Consolidated WitvlietDataReader into a single class
29070b63 23 Feb 2024 16:03 Padraig Gleeson (admin)

Adding individual reader classes for white & witvliet
9247be7c 23 Feb 2024 14:56 Padraig Gleeson (admin)

Updated spreadsheet
0c85e8b2 23 Feb 2024 00:04 Padraig Gleeson (admin)

Merge branch 'development' into test2
82425973 23 Feb 2024 00:01 Padraig Gleeson (admin)

Merge pull request #71 from yasinthanvickneswaran/master

test white
5f119dc3 22 Feb 2024 21:14 yasinthanvickneswaran

WhiteDataReader
68285a41 22 Feb 2024 16:23 Padraig Gleeson (admin)

Improved plotting of matrices and added to Comparison notebook
3dbf9c81 22 Feb 2024 05:22 yasinthanvickneswaran

WhiteDataReader
8bbe6661 22 Feb 2024 01:24 yasinthanvickneswaran

WhiteDataReader
f47b5a12 21 Feb 2024 23:09 yasinthanvickneswaran

Add files via upload
4e4bbaf9 21 Feb 2024 23:07 yasinthanvickneswaran

Merge branch 'master' of https://github.com/yasinthanvickneswaran/c302
2a24abf2 21 Feb 2024 23:07 yasinthanvickneswaran

WhiteDataReader
90efd0d8 21 Feb 2024 22:05 Padraig Gleeson (admin)

Improved neurotransmitters in WNA
89f83812 21 Feb 2024 20:39 Padraig Gleeson (admin)

Initial update to WormNeuroAtlas reader
c8d0fe28 21 Feb 2024 19:45 yasinthanvickneswaran

Update aconnectome_white_1986_A.csv
e4171e49 21 Feb 2024 19:45 yasinthanvickneswaran

Update aconnectome_white_1986_A.csv
180dad5a 20 Feb 2024 16:51 yasinthanvickneswaran

WhiteDataReader
e5a61c42 20 Feb 2024 16:47 yasinthanvickneswaran

Add files via upload
80648f40 19 Feb 2024 17:31 Padraig Gleeson (admin)

Merge pull request #69 from openworm/experimental

Improved Varshney & Witvliet
75c830bf 15 Feb 2024 18:29 yasinthanvickneswaran

Comparison
d294d2ea 15 Feb 2024 18:28 Padraig Gleeson (admin)

Merge pull request #68 from yasinthanvickneswaran/master

witvliet
c459623d 15 Feb 2024 18:27 yasinthanvickneswaran

UpdatedSpreadsheetDataReader
3fed37e5 15 Feb 2024 18:24 yasinthanvickneswaran

Merge pull request #4 from openworm/experimental

Updates to Varshney
b7686d85 15 Feb 2024 18:24 yasinthanvickneswaran

W_SpreadsheetDataReader