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# Date Author Comment
03d0b56a 08 Sep 2020 20:12 Padraig Gleeson (admin)

More testing updates
22e33a82 08 Sep 2020 19:50 Padraig Gleeson (admin)

More testing
e7e256c7 04 Sep 2020 20:35 Padraig Gleeson (admin)

Add docker image info
28c5cb42 22 Jun 2020 19:06 Padraig Gleeson (admin)

More tests on X
cf00410e 11 Jun 2020 23:02 Padraig Gleeson (admin)

Ideas for "parameters X"
a0de26b1 10 Jun 2020 20:09 Padraig Gleeson (admin)

Regenerated and tested
f1bf287a 10 Jun 2020 20:00 Padraig Gleeson (admin)

Regenerated and tested
69684351 10 Jun 2020 19:09 Padraig Gleeson (admin)

Regenerated
644d7e28 07 Apr 2020 21:04 Padraig Gleeson (admin)

Regenerated with latest c302; adds recommended_duration_ms to network for more approp. sim duration on OSB
3e08908c 26 Mar 2020 20:54 Padraig Gleeson (admin)

Regenerated using local cell_C.xml
a427b161 24 Feb 2020 21:10 Padraig Gleeson (admin)

Increment verison in master
ef6729f9 24 Feb 2020 21:01 Padraig Gleeson (admin)

Increment version c302
3a29ef74 24 Feb 2020 18:49 Padraig Gleeson (admin)

Better version
5df7474d 24 Feb 2020 18:38 Padraig Gleeson (admin)

Specific python module versions
9917a1ad 24 Feb 2020 17:39 Padraig Gleeson (admin)

Merge branch 'master' into ow-0.9

  • master: Tweaks for python3 Test py36 Disable graphical setup in travis Update .travis.yml Update .travis.yml Improved speed Reusing PyOpenWorm connection for all cell metadata queries Merged master & updated to v0.7.4...
2d8e09d7 07 Feb 2020 17:26 Padraig Gleeson (admin)

Tweaks for python3
acd27c55 07 Feb 2020 16:57 Padraig Gleeson (admin)

Test py36
20c03894 07 Feb 2020 16:45 Padraig Gleeson (admin)

Disable graphical setup in travis
a18482a6 07 Feb 2020 16:44 Padraig Gleeson (admin)

Merge branch 'pow-refactor' into test_xenial

  • pow-refactor: Update .travis.yml
4c16bcdc 07 Feb 2020 02:38 Padraig Gleeson (admin)

Update .travis.yml
26a6fc54 06 Feb 2020 23:34 Padraig Gleeson (admin)

Update .travis.yml
b3fd8d5f 06 Feb 2020 23:26 Padraig Gleeson (admin)

Improved speed
7e8eee7a 05 Feb 2020 21:34 Mark Watts

Reusing PyOpenWorm connection for all cell metadata queries
53082c98 04 Feb 2020 16:29 Padraig Gleeson (admin)

Merged master & updated to v0.7.4
3f56b5d4 04 Feb 2020 15:57 Padraig Gleeson (admin)

Merge branch 'master' into pow-refactor

  • master: More ideas More work Random thoughts Regenerated
1a9bb6d8 28 Jan 2020 23:06 Padraig Gleeson (admin)

More ideas
7648cf27 28 Jan 2020 20:17 Padraig Gleeson (admin)

More work
072cf147 28 Jan 2020 19:18 Padraig Gleeson (admin)

Random thoughts
6d89c87b 28 Jan 2020 15:40 Padraig Gleeson (admin)

Regenerated
f1d47214 28 Jan 2020 11:07 Mark Watts

Suppressing some excessive logging from PyOpenWorm when setting up a connection
b1d04c85 28 Jan 2020 11:07 Mark Watts

Using PyOpenWorm without all the global variables

  • Creates a connection for each usage for simplicity
8eba1d5c 16 Jan 2020 23:53 Padraig Gleeson (admin)

Updates for improved import for Python 3

Regenerated nml files
dac64ff3 04 Nov 2019 17:39 Padraig Gleeson (admin)

Add .openworm.yml
70b87470 18 Oct 2019 20:24 Padraig Gleeson (admin)

Merge pull request #23 from necr0n/master

Minor edits: python3 compatibility, dependencies update
a8073cc3 18 Oct 2019 18:14 Vladimir Chukov

Update .travis.yml

Python-dev is required for C extensions
cf5ece76 18 Oct 2019 17:07 Vladimir Chukov

Update init.py

Updating init file to be Python3 compatible
84607c80 09 Oct 2019 18:09 Padraig Gleeson (admin)

Ignoring
930f702e 01 Jul 2019 16:14 Padraig Gleeson (admin)

Update .travis.yml
e3e5d09c 01 Jul 2019 15:55 Padraig Gleeson (admin)

Update README.md
62f248a1 04 Jun 2019 23:36 Padraig Gleeson (admin)

Minor fixes
762be594 04 Jun 2019 14:54 Padraig Gleeson (admin)

Update .travis.yml
ec8f0fd0 03 Jun 2019 23:13 Padraig Gleeson (admin)

Merge pull request #21 from openworm/latest_pyow

Latest pyow
c598e02d 03 Jun 2019 22:51 Padraig Gleeson (admin)

PEP updates
6742a016 31 May 2019 18:49 Padraig Gleeson (admin)

To v0.7.3; Regenerated files
8fd141bf 31 May 2019 16:56 Padraig Gleeson (admin)

Updated use of pyopenworm
31386e8f 24 May 2019 23:00 Padraig Gleeson (admin)

Use local pyopenworm
56effdf8 24 May 2019 22:45 Padraig Gleeson (admin)

Tweaks
8a5425cf 24 May 2019 22:33 Padraig Gleeson (admin)

Missing lib
1665b180 24 May 2019 22:19 Padraig Gleeson (admin)

Test latest pyow
d347c53f 30 Apr 2019 23:24 Padraig Gleeson (admin)

Merge branch 'master' of github.com:openworm/c302

  • 'master' of github.com:openworm/c302: Tiny spelling fix (#20)
c75118c8 30 Apr 2019 23:23 Padraig Gleeson (admin)

Add RIA example
097d4677 23 Apr 2019 08:26 Renaldas Zioma

Tiny spelling fix (#20)
e46ab1b0 22 Mar 2019 22:15 Padraig Gleeson (admin)

Update .travis.yml
2747ad0f 22 Mar 2019 22:03 Padraig Gleeson (admin)

Cleaning up
86d6ed03 22 Feb 2019 01:32 Padraig Gleeson (admin)

Create README.md
7d9a5ed1 07 Feb 2019 15:18 Padraig Gleeson (admin)

Much tidied & tested OpenWormReader & made others all use read_data()

Updated version of c302
a8049973 06 Feb 2019 19:13 Padraig Gleeson (admin)

Updated & tested OpenWormReader, SpreadsheetDataReader etc.
fd0c35e8 18 Jan 2019 15:54 Padraig Gleeson (admin)

Merge branch 'master' of github.com:openworm/c302

  • 'master' of github.com:openworm/c302: Update README.md Update README.md Create OpenWormOverview.md
dc2047e3 18 Jan 2019 15:54 Padraig Gleeson (admin)

Support for upcoming version of libNeuroML
f4542a3a 04 Jan 2019 14:30 Padraig Gleeson (admin)

Update README.md
1a20fcbc 04 Jan 2019 14:28 Padraig Gleeson (admin)

Update README.md
5f273ded 04 Jan 2019 14:24 Padraig Gleeson (admin)

Create OpenWormOverview.md
14e7aeda 04 Jan 2019 14:17 Padraig Gleeson (admin)

Merge pull request #15 from gsarma/master

Adding overview graphic to README.
7c2c8ed7 23 Nov 2018 15:41 Padraig Gleeson (admin)

Minor typo
24bcb379 26 Oct 2018 16:08 Padraig Gleeson (admin)

Initial parameter sweep code
88a9feca 26 Oct 2018 15:11 Padraig Gleeson (admin)

Update README.md
348195f5 03 Oct 2018 15:24 Padraig Gleeson (admin)

Merge pull request #16 from openworm/improve-example

add clarity to example. no functionality change
88b245e2 28 Sep 2018 18:39 Matt Cuffaro

add clarity to example. no functionality change
234ed240 30 Aug 2018 20:12 Gopal Sarma

Adding overview graphic to README.
0ce73d0b 01 Aug 2018 14:04 Padraig Gleeson (admin)

Full D pic
01ba5252 31 Jul 2018 12:27 Padraig Gleeson (admin)

Regenerated and updated to v0.7.0
3e0d163b 30 Jul 2018 18:19 Padraig Gleeson (admin)

Merge branch 'master' of github.com:openworm/c302

  • 'master' of github.com:openworm/c302: Update README.md
78fad2ce 30 Jul 2018 18:18 Padraig Gleeson (admin)

Longer stimulation
a539a27d 30 Jul 2018 08:46 Padraig Gleeson (admin)

Update README.md
e3913201 27 Jul 2018 16:21 Padraig Gleeson (admin)

Tweak syn values
4f17c1f0 27 Jul 2018 15:49 Padraig Gleeson (admin)

Update readme: view model on osb

Tweak syn param in C0
782fea68 26 Jul 2018 18:12 Padraig Gleeson (admin)

Changing Syns to ensure only 4 x 1to1 connections

Change input to Oscillator for more activity across param sets
Regenerated images
5718b607 26 Jul 2018 16:58 Padraig Gleeson (admin)

Add sine example
91648b5f 26 Jul 2018 16:24 Padraig Gleeson (admin)

Ensuring unphysiological_offset_current ==0 unless explicitly set

Regenerated images
91a1eda8 26 Jul 2018 13:51 Padraig Gleeson (admin)

More docs
259627c1 26 Jul 2018 11:47 Padraig Gleeson (admin)

More docs
0a5f3acc 26 Jul 2018 11:09 Padraig Gleeson (admin)

Better documentation
0fff2b43 25 Jul 2018 15:50 Padraig Gleeson (admin)

Add script for testing n python3; more in Readme; general cleanup
c5cf225e 25 Jul 2018 14:43 Padraig Gleeson (admin)

Change test to use pynml

Minor update to readme
41e3c937 24 Jul 2018 10:07 Padraig Gleeson (admin)

Update README.md
9f688681 24 Jul 2018 10:06 Padraig Gleeson (admin)

Update README.md
3e723fb8 10 Jul 2018 10:42 Padraig Gleeson (admin)

Adding UpdatedSpreadsheetDataReader2 & pointing it at c302/data/herm_full_edgelist_MODIFIED.csv

Will be soon replaced by more explicit addition/removal of connections
in c302/c302_FW.py
730ac150 10 Jul 2018 08:36 Padraig Gleeson (admin)

Update to 0.6.1; adds c302 executable
49acae15 06 Jul 2018 15:39 Padraig Gleeson (admin)

Added herm_full_edgelist.csv & fixed UpdatedSpreadsheetDataReader.py
f8d49e8b 05 Jul 2018 11:39 Padraig Gleeson (admin)

Requires pyopenworm==0.7.1
2f76e2e9 29 Jun 2018 15:27 Padraig Gleeson (admin)

Regenerated images
cf24bf52 29 Jun 2018 14:13 Padraig Gleeson (admin)

Merge branch 'master' of github.com:openworm/c302

  • 'master' of github.com:openworm/c302: Update .travis.yml Update .travis.yml
675b01dd 29 Jun 2018 14:02 Padraig Gleeson (admin)

Update .travis.yml
7c60239d 29 Jun 2018 13:51 Padraig Gleeson (admin)

Regenerated images
03f07bbd 29 Jun 2018 13:49 Padraig Gleeson (admin)

Update .travis.yml
78fa7144 29 Jun 2018 13:40 Padraig Gleeson (admin)

Updated tests
e4544e13 01 Jun 2018 14:36 Padraig Gleeson (admin)

Retested & generated
999c0c6e 17 Apr 2018 12:55 Padraig Gleeson (admin)

Image
8b1a38ea 17 Apr 2018 12:46 Padraig Gleeson (admin)

More images
3e4f12c6 17 Apr 2018 12:30 Padraig Gleeson (admin)

Merge pull request #4 from lungd/development

Development