Revision:

Revisions

# Date Author Comment
40cd4b38 02 Oct 2020 10:24 Mark Watts

Making OWR main script work for py3

  • Also changing back to only returning neuron-neuron conns for read_data. Was confused about what to return
c72668fd 02 Oct 2020 08:57 Mark Watts

Fixing c302_utils bundle usage

  • Also correcting misuse of \ in natsort regular expression
2f16f9d3 02 Oct 2020 08:56 Mark Watts

Fixing UpdatedSpreadsheetDataReader for Python 3

  • Relative imports need a dot
c97f0c3b 02 Oct 2020 08:19 Mark Watts

Adding the "hack" for synclass in OWR
88f6ff7f 02 Oct 2020 07:17 Mark Watts

Merge remote-tracking branch 'origin/master' into pow-refactor
949f25d2 02 Oct 2020 07:16 Mark Watts

Returning all connections from OpenWormReader

  • Was just returning neuron-neuron connections
  • Also rewriting _get_cell_info to make better use of owmeta
015be3f8 30 Sep 2020 19:18 Mark Watts

Adding owmeta version to info print-out
ead0e837 30 Sep 2020 19:13 Mark Watts

Making owmeta-provided neuron info optional again
09c5f47e 30 Sep 2020 19:08 Mark Watts

Closing bundle connection earlier

  • Avoids the need for a nullcontext
8e2d9e5a 30 Sep 2020 08:50 Mark Watts

Removing debug print statement
4b498714 30 Sep 2020 08:45 Mark Watts

Reverting unneeded changes to SpreadsheetDataReader.py
40bee6ee 24 Sep 2020 19:44 Padraig Gleeson (admin)

Further py3 improvements
3e3f6694 22 Sep 2020 21:09 Padraig Gleeson (admin)

Increment version; py3 fixes
5294ad67 13 Sep 2020 03:25 Mark Watts

Adding to "total cells" count in OWR from reading connections
4f2980ab 13 Sep 2020 03:25 Mark Watts

Using the query form for Worm query in OpenWormReader

  • Provides resilience to changes in the identifier generation logic
d28d0ad8 13 Sep 2020 03:25 Mark Watts

Removing some duplicate property queries
e09a736d 13 Sep 2020 03:25 Mark Watts

Updating for owmeta-core changes
e86c87a4 13 Sep 2020 03:25 Mark Watts

Using owmeta-core property expression to_objects

  • Makes the query and getting at results cleaner visually
aa92ec58 13 Sep 2020 03:25 Mark Watts

Reusing connections query for muscle data
63e94938 13 Sep 2020 03:25 Mark Watts

Rewriting connections queries with new expression syntax
0aafa545 13 Sep 2020 03:25 Mark Watts

Rewriting OpenWormReader connections query

  • Takes advantage of triples_choices optimization
f80cb3ec 13 Sep 2020 03:25 Mark Watts

Removing "muscle" info in get_cellinfo

  • Never invoked
  • Also, pulling _get_cell_info above population construction loop (~1s)
22148e35 13 Sep 2020 03:25 Mark Watts

Switching to the "stored" context for retrieving from the owmeta-data bundle
eed647bf 13 Sep 2020 03:25 Mark Watts

Falling back to an itertools.nullcontext when unable to create an owmeta bundle
fbb04583 13 Sep 2020 03:25 Mark Watts

Updating from PyOpenWorm to owmeta with bundles
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