c302
Note The source for this project is hosted on GitHub

root / c302 @ pow-refactor

Name Size Revision Age Author Comment
  NeuroML2 10c95ee9 about 8 years Padraig Gleeson (admin) Adding .travis.yml
  data 3e723fb8 almost 8 years Padraig Gleeson (admin) Adding UpdatedSpreadsheetDataReader2 & pointing...
CElegansNeuronTables.xls 361 KB b00bb405 about 8 years Padraig Gleeson (admin) Restructure to allow setup.py install
CompareMain.py 9.56 KB 2d8e09d7 over 6 years Padraig Gleeson (admin) Tweaks for python3
LEMS_c302_TEMPLATE.xml 3.12 KB c9186b1a about 8 years Padraig Gleeson (admin) Initial version
NeuroMLUtilities.py 1.76 KB ecf3b821 about 8 years Padraig Gleeson (admin) More files...
NeuronConnectFormatted.xlsx 146 KB b00bb405 about 8 years Padraig Gleeson (admin) Restructure to allow setup.py install
OpenWormReader.py 6.2 KB 447da990 over 5 years Mark Watts Tweaking for OpenWormReader
README.md 510 Bytes 86d6ed03 over 7 years Padraig Gleeson (admin) Create README.md
SpreadsheetDataReader.py 3.99 KB 4b498714 over 5 years Mark Watts Reverting unneeded changes to SpreadsheetDataRe...
UpdatedSpreadsheetDataReader.py 5.64 KB 3b012d27 over 5 years Mark Watts Using OpenWormReader rather than SpreadsheetDat...
UpdatedSpreadsheetDataReader2.py 5.81 KB 682459a6 over 5 years Mark Watts Making test.sh runnable with Python relative im...
__init__.py 56.1 KB 633ca818 over 5 years Mark Watts Fixing cell queries
__version__.py 23 Bytes 3e3f6694 over 5 years Padraig Gleeson (admin) Increment version; py3 fixes
analyse.py 718 Bytes ecf3b821 about 8 years Padraig Gleeson (admin) More files...
backers.py 1.81 KB 05493736 over 5 years Mark Watts Adjusting Muscles from owmeta into the format e...
bioparameters.py 5.49 KB 949f25d2 over 5 years Mark Watts Returning all connections from OpenWormReader ...
c302_FW.py 9.92 KB 40bee6ee over 5 years Padraig Gleeson (admin) Further py3 improvements
c302_Full.py 2.16 KB 3b012d27 over 5 years Mark Watts Using OpenWormReader rather than SpreadsheetDat...
c302_IClamp.py 1.95 KB 633ca818 over 5 years Mark Watts Fixing cell queries
c302_IClampMuscle.py 1.29 KB 3b012d27 over 5 years Mark Watts Using OpenWormReader rather than SpreadsheetDat...
c302_MultiSyns.py 1.31 KB 40bee6ee over 5 years Padraig Gleeson (admin) Further py3 improvements
c302_MuscleTest.py 6.21 KB 3b012d27 over 5 years Mark Watts Using OpenWormReader rather than SpreadsheetDat...
c302_Muscles.py 4.11 KB 3b012d27 over 5 years Mark Watts Using OpenWormReader rather than SpreadsheetDat...
c302_MusclesSine.py 5.24 KB 40bee6ee over 5 years Padraig Gleeson (admin) Further py3 improvements
c302_Oscillator.py 3.14 KB 3b012d27 over 5 years Mark Watts Using OpenWormReader rather than SpreadsheetDat...
c302_OscillatorM.py 3.7 KB 40bee6ee over 5 years Padraig Gleeson (admin) Further py3 improvements
c302_Pharyngeal.py 1.6 KB 3b012d27 over 5 years Mark Watts Using OpenWormReader rather than SpreadsheetDat...
c302_RIA.py 1.96 KB 40bee6ee over 5 years Padraig Gleeson (admin) Further py3 improvements
c302_Social.py 2.49 KB 3b012d27 over 5 years Mark Watts Using OpenWormReader rather than SpreadsheetDat...
c302_Syns.py 2.18 KB 3b012d27 over 5 years Mark Watts Using OpenWormReader rather than SpreadsheetDat...
c302_TapWithdrawal.py 13.1 KB 40bee6ee over 5 years Padraig Gleeson (admin) Further py3 improvements
c302_TargetMuscle.py 1.63 KB 447da990 over 5 years Mark Watts Tweaking for OpenWormReader
c302_utils.py 19.4 KB 447da990 over 5 years Mark Watts Tweaking for OpenWormReader
cell_B.xml 1.87 KB 721722a5 about 8 years Padraig Gleeson (admin) Tests running
cell_C.xml 4.84 KB 721722a5 about 8 years Padraig Gleeson (admin) Tests running
cell_X.xml 552 Bytes cf00410e almost 6 years Padraig Gleeson (admin) Ideas for "parameters X"
custom_muscle_components.xml 12.5 KB 730ac150 almost 8 years Padraig Gleeson (admin) Update to 0.6.1; adds c302 executable
custom_synapses.xml 11.1 KB 721722a5 about 8 years Padraig Gleeson (admin) Tests running
gen_graph.py 5.57 KB 2d8e09d7 over 6 years Padraig Gleeson (admin) Tweaks for python3
parameters_A.py 14.8 KB 8eba1d5c over 6 years Padraig Gleeson (admin) Updates for improved import for Python 3 Regen...
parameters_B.py 7.6 KB 8eba1d5c over 6 years Padraig Gleeson (admin) Updates for improved import for Python 3 Regen...
parameters_BC1.py 8.53 KB 8eba1d5c over 6 years Padraig Gleeson (admin) Updates for improved import for Python 3 Regen...
parameters_C.py 20.3 KB 8eba1d5c over 6 years Padraig Gleeson (admin) Updates for improved import for Python 3 Regen...
parameters_C0.py 23.2 KB 8eba1d5c over 6 years Padraig Gleeson (admin) Updates for improved import for Python 3 Regen...
parameters_C1.py 10.7 KB 8eba1d5c over 6 years Padraig Gleeson (admin) Updates for improved import for Python 3 Regen...
parameters_C2.py 61.4 KB 8eba1d5c over 6 years Padraig Gleeson (admin) Updates for improved import for Python 3 Regen...
parameters_D.py 20.3 KB 8eba1d5c over 6 years Padraig Gleeson (admin) Updates for improved import for Python 3 Regen...
parameters_D1.py 15.7 KB 8eba1d5c over 6 years Padraig Gleeson (admin) Updates for improved import for Python 3 Regen...
parameters_X.py 18.9 KB 28c5cb42 almost 6 years Padraig Gleeson (admin) More tests on X
runAndPlot.py 15.6 KB 92c19672 over 5 years Mark Watts Using absolute import for Python 3

Latest revisions

# Date Author Comment
633ca818 04 Oct 2020 22:19 Mark Watts

Fixing cell queries

447da990 04 Oct 2020 21:43 Mark Watts

Tweaking for OpenWormReader

92c19672 04 Oct 2020 21:41 Mark Watts

Using absolute import for Python 3

3b012d27 04 Oct 2020 06:12 Mark Watts

Using OpenWormReader rather than SpreadsheetDataReader for c302_* scripts

16df718d 04 Oct 2020 06:10 Mark Watts

Limiting muscles from OWR to body wall muscles

3219b99c 02 Oct 2020 18:57 Mark Watts

Merge branch 'ow-0.9.1' into pow-refactor

682459a6 02 Oct 2020 18:56 Mark Watts

Making test.sh runnable with Python relative imports

  • Running as a script (e.g., python c302/c302_IClamp.py) does not allow to resolve relative imports made in c302_IClamp.py
05493736 02 Oct 2020 18:48 Mark Watts

Adjusting Muscles from owmeta into the format expected by c302

a7bb6e48 02 Oct 2020 10:29 Mark Watts

Starting to make OWR muscles work with c302.generate

  • Still a gap for dealing with inputs
  • Using a somewhat less obscure regex for parsing muscle names into body locations
40cd4b38 02 Oct 2020 10:24 Mark Watts

Making OWR main script work for py3

  • Also changing back to only returning neuron-neuron conns for read_data. Was confused about what to return

View revisions