Revision:

Revisions

# Date Author Comment
3f12941a 26 Jun 2019 14:44 Padraig Gleeson (admin)

Fixing potential security vulnerabilities
92ad225e 26 Jun 2019 14:31 Padraig Gleeson (admin)

Merge branch 'dev_jd' into dev_pg

  • dev_jd: Add missing file with the ranking of the different areas
8309f27b 26 Jun 2019 14:30 Padraig Gleeson (admin)

Merge branch 'dev_jd' into dev_pg

  • dev_jd: Generalise the 3-areas connectivity
87d7b6f5 25 Jun 2019 00:09 Jessica Dafflon

Add missing file with the ranking of the different areas
2f190fcf 12 Jun 2019 20:25 Jessica Dafflon

Generalise the 3-areas connectivity
aff9d036 09 May 2019 19:57 Padraig Gleeson (admin)

Regenerated nml
c230e5fe 08 May 2019 23:09 Jessica Dafflon

Visualise interareal matrix connectivity for 3 regions

  • Hard-code the 3 areas interconnectivity
62ae323e 08 May 2019 17:12 Jessica Dafflon

WIP: Make network definition more generalisable

  • Load SLN/FLN description for the different regions and use this information to define the network
a9d523c0 23 Apr 2019 18:07 Jessica Dafflon

Initial analysis with FF and FB connections
d9af2cc6 12 Apr 2019 18:21 Padraig Gleeson (admin)

Updated generated nml2
fef277df 30 Mar 2019 20:04 Jessica Dafflon

Plot peak value of the power spectrum at the supergranular layer

  • This represent the insert at figure 4
  • Also improve the function documentation
  • NOTE: Only 10 repetions are done (not 30 as on the Mejias code)
6bc4398f 21 Mar 2019 22:17 Jessica Dafflon

Plot power spectrum when stimulus is applied to V4 and recorded at V1

  • Reproduce Fig 4E and 4F
7bfb24d3 21 Mar 2019 20:06 Jessica Dafflon

Plot power spectrum for L5/6

  • Make interareal spectrum more generalisable and plot power spectrum for L5/6
4f4750a9 20 Mar 2019 22:40 Jessica Dafflon

Calculate power spectrum for at V4 for layer L2/3

  • Calculate power spectrum for V4 layer L2/3 (Fig 4b)
6c0dd871 18 Mar 2019 21:35 Jessica Dafflon

Interareal Analysis

  • Plot power spectrum for V4 (L23 and L56)
988a2a59 14 Mar 2019 20:05 Jessica Dafflon

Restructure GenerateNeuroMLlite

  • Restructure main file GenerateNeuroMLlite so that you can iterate over all regions separately and define populations and add InputSources seperately
04731718 09 Mar 2019 14:42 Jessica Dafflon

Intereal Analysis

  • Generate simulation for rest and stimulus condition for the interareal analysis
  • Calculate the power analysis for the inter areal simulation
565301c1 22 Feb 2019 17:37 Jessica Dafflon

WIP
1d67b1e6 22 Feb 2019 17:37 Jessica Dafflon

Sort areasList saved into the matfile by their ranked order
90fa2b1c 22 Feb 2019 17:37 Jessica Dafflon

Interareal NeuroML simualtion analysis

  • Modify find_peak_frequency to return different amplitudes
  • Initial interlaminar calculations
27e0aaf2 19 Feb 2019 20:34 Padraig Gleeson (admin)

Merge branch 'dev_pg'

  • dev_pg: Tested again Fix for GenerateNetwork.py
0919688c 19 Feb 2019 20:33 Padraig Gleeson (admin)

Merge pull request #21 from OpenSourceBrain/dev_jd

Matlab code, update tests and initial interareal simulation
2018228f 19 Feb 2019 20:30 Padraig Gleeson (admin)

Tested again
39942885 19 Feb 2019 20:16 Padraig Gleeson (admin)

Fix for GenerateNetwork.py
b8ecc63f 11 Feb 2019 19:17 Jessica Dafflon

Commit unnecessary line

  • Commit unnecessary loading of matfile in the Python interlaminar analysis
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