Golgi cell reduced morphology - Eugenio Piasini
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Gjgolgi reducedmorph Gjgolgi reducedmorph Gjgolgi reducedmorph
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Name Size Revision Age Author Comment
  AMPA_direct 7860329c almost 13 years Eugenio Piasini Trying to script an attenuation-length analysis...
  AMPA_spillover 7860329c almost 13 years Eugenio Piasini Trying to script an attenuation-length analysis...
  ApicalSyn 10895128 almost 13 years Eugenio Piasini Initial commit: nC project.
  CALC 7860329c almost 13 years Eugenio Piasini Trying to script an attenuation-length analysis...
  CALC_ca2 7860329c almost 13 years Eugenio Piasini Trying to script an attenuation-length analysis...
  CaHVA_CML 10895128 almost 13 years Eugenio Piasini Initial commit: nC project.
  CaLVA_CML 10895128 almost 13 years Eugenio Piasini Initial commit: nC project.
  Ca_HVA 7860329c almost 13 years Eugenio Piasini Trying to script an attenuation-length analysis...
  Ca_LVA 7860329c almost 13 years Eugenio Piasini Trying to script an attenuation-length analysis...
  ESyn 10895128 almost 13 years Eugenio Piasini Initial commit: nC project.
  FastSynInput 7860329c almost 13 years Eugenio Piasini Trying to script an attenuation-length analysis...
  FastSynInput_if_gl 7860329c almost 13 years Eugenio Piasini Trying to script an attenuation-length analysis...
  GABA 7860329c almost 13 years Eugenio Piasini Trying to script an attenuation-length analysis...
  GapJuncCML 10895128 almost 13 years Eugenio Piasini Initial commit: nC project.
  GapJuncDiscrete b9214536 over 12 years Eugenio Piasini Manipulating heterogeneity of GJ connectivity a...
  GapJuncGCL 7860329c almost 13 years Eugenio Piasini Trying to script an attenuation-length analysis...
  GapJuncML1 7860329c almost 13 years Eugenio Piasini Trying to script an attenuation-length analysis...
  GapJuncML2 7860329c almost 13 years Eugenio Piasini Trying to script an attenuation-length analysis...
  GapJuncML3 7860329c almost 13 years Eugenio Piasini Trying to script an attenuation-length analysis...
  Golgi_AMPA_mf 59cfe776 almost 13 years Eugenio Piasini Added: rate-coded I/O comparison (Vervaeke, Sol...
  Golgi_AMPA_pf 59cfe776 almost 13 years Eugenio Piasini Added: rate-coded I/O comparison (Vervaeke, Sol...
  Golgi_CALC_CML 10895128 almost 13 years Eugenio Piasini Initial commit: nC project.
  Golgi_CALC_ca2_CML 10895128 almost 13 years Eugenio Piasini Initial commit: nC project.
  Golgi_NMDA_mf 59cfe776 almost 13 years Eugenio Piasini Added: rate-coded I/O comparison (Vervaeke, Sol...
  Golgi_NMDA_pf 59cfe776 almost 13 years Eugenio Piasini Added: rate-coded I/O comparison (Vervaeke, Sol...
  Golgi_gap_2010 a93bb2d0 almost 13 years Eugenio Piasini Added network (de)synchronisation analysis as i...
  Golgi_gap_GCL f2b34742 almost 13 years Eugenio Piasini Rate-coded I/O analysis for mossy input, with g...
  Golgi_gap_ML1 f2b34742 almost 13 years Eugenio Piasini Rate-coded I/O analysis for mossy input, with g...
  Golgi_gap_ML2 f2b34742 almost 13 years Eugenio Piasini Rate-coded I/O analysis for mossy input, with g...
  Golgi_gap_ML3 f2b34742 almost 13 years Eugenio Piasini Rate-coded I/O analysis for mossy input, with g...
  HCN1 7860329c almost 13 years Eugenio Piasini Trying to script an attenuation-length analysis...
  HCN2 7860329c almost 13 years Eugenio Piasini Trying to script an attenuation-length analysis...
  ISyn 10895128 almost 13 years Eugenio Piasini Initial commit: nC project.
  KA 7860329c almost 13 years Eugenio Piasini Trying to script an attenuation-length analysis...
  KAHP_CML 18f23cd8 almost 13 years Eugenio Piasini Playing around with morphology to see effects o...
  KA_CML 18f23cd8 almost 13 years Eugenio Piasini Playing around with morphology to see effects o...
  KBK 5e176f77 almost 13 years Eugenio Piasini Fixed 'double spike' bug caused by on old KBK c...
  KC_CML 10895128 almost 13 years Eugenio Piasini Initial commit: nC project.
  KM 7860329c almost 13 years Eugenio Piasini Trying to script an attenuation-length analysis...
  KSK 7860329c almost 13 years Eugenio Piasini Trying to script an attenuation-length analysis...
  KV 7860329c almost 13 years Eugenio Piasini Trying to script an attenuation-length analysis...
  KV_CML 18f23cd8 almost 13 years Eugenio Piasini Playing around with morphology to see effects o...
  Kslow_CML 10895128 almost 13 years Eugenio Piasini Initial commit: nC project.
  LeakCond 10895128 almost 13 years Eugenio Piasini Initial commit: nC project.
  LeakConductance 10895128 almost 13 years Eugenio Piasini Initial commit: nC project.
  LeakConductance_if_gl 7860329c almost 13 years Eugenio Piasini Trying to script an attenuation-length analysis...
  MultiDecaySyn 10895128 almost 13 years Eugenio Piasini Initial commit: nC project.
  MultiDecaySyn_VervaekeEtAl_GJCompensate 7860329c almost 13 years Eugenio Piasini Trying to script an attenuation-length analysis...
  NMDA 7860329c almost 13 years Eugenio Piasini Trying to script an attenuation-length analysis...
  NMDA_if_gl 7860329c almost 13 years Eugenio Piasini Trying to script an attenuation-length analysis...
  NaP 7860329c almost 13 years Eugenio Piasini Trying to script an attenuation-length analysis...
  NaP_CML 10895128 almost 13 years Eugenio Piasini Initial commit: nC project.
  NaR 7860329c almost 13 years Eugenio Piasini Trying to script an attenuation-length analysis...
  NaR_CML 10895128 almost 13 years Eugenio Piasini Initial commit: nC project.
  NaT 7860329c almost 13 years Eugenio Piasini Trying to script an attenuation-length analysis...
  NaT_CML 10895128 almost 13 years Eugenio Piasini Initial commit: nC project.
  Syn 10895128 almost 13 years Eugenio Piasini Initial commit: nC project.
  VariableLeakConductance 7860329c almost 13 years Eugenio Piasini Trying to script an attenuation-length analysis...
  hcn1f_CML 10895128 almost 13 years Eugenio Piasini Initial commit: nC project.
  hcn1s_CML 10895128 almost 13 years Eugenio Piasini Initial commit: nC project.
  hcn2f_CML 10895128 almost 13 years Eugenio Piasini Initial commit: nC project.
  hcn2s_CML 10895128 almost 13 years Eugenio Piasini Initial commit: nC project.
README 345 Bytes 10895128 almost 13 years Eugenio Piasini Initial commit: nC project.

Latest revisions

# Date Author Comment
b9214536 29 Nov 2012 17:12 Eugenio Piasini

Manipulating heterogeneity of GJ connectivity as a graph-theoretical
degree distribution.
a93bb2d0 30 Oct 2012 17:10 Eugenio Piasini

Added network (de)synchronisation analysis as in Vervaeke2010.

Two new simulation configurations, network_desynchronisation and
network_desynchronisation_2010gap, try to reproduce the
desynchronisation effect reported in Vervaeke2010. The expected
behaviour seems to emerge only if the gap junction connectivity is...
f2b34742 22 Oct 2012 17:01 Eugenio Piasini

Rate-coded I/O analysis for mossy input, with gap junctions.

The gap junctions, the network and the stimuli are implemented as in
Vervaeke2012, except for heterogeneity. The detailed cell model
replicates the results in the paper, and the simplified one seems to...
59cfe776 18 Oct 2012 17:01 Eugenio Piasini

Added: rate-coded I/O comparison (Vervaeke, Solinas and reduced).

Added various relevant scripts and nC project elements. Note that the
existing nework connections in the nC project have been renamed, and
this might have broken some of the old scripts.

At this point, the results of the rate-coded I/O relationship are:...
5e176f77 24 Sep 2012 18:29 Eugenio Piasini

Fixed 'double spike' bug caused by on old KBK channel implementation.

This is a well-known problem with an old version of the mod file for
the KBK channel, and had been squashed somewhere else (at least in the
original model by Solinas - see relevant files on ModelDB and Open...
aebdd67e 24 Sep 2012 18:12 Eugenio Piasini

Formatting: preparing to modify KBK channel.
18f23cd8 12 Sep 2012 17:46 Eugenio Piasini

Playing around with morphology to see effects on FI and attenuation.
dce3c5dd 12 Sep 2012 13:34 Eugenio Piasini

Fixed a remaining issue with the detailed morphology cell.

Note that I turned off again all Na channels.

Now pure NeuroML morphology read/write seems to be working fine,
except that it removes property elements tagged 'comment'.
This will need to be fixed in neuroConstruct, but doesn't have...
7a50584e 12 Sep 2012 11:28 Eugenio Piasini

Reverted morphologically-detailed cell model back to its original form
to fix some issues (namely, loss of 'number of internal divisions'
properties) generated when doing NeuroML write/read with older versions
of neuroConstruct.
7860329c 05 Sep 2012 18:32 Eugenio Piasini

Trying to script an attenuation-length analysis that could be compared
to Koen's 2012 paper.

The script itself is not yet usable. I have imported a cell from
Vervaeke2012 (mainly for the synaptic model, but also to keep it there
as a comparison) and a spike relay that I need to simulate a single...

View revisions