Golgi cell reduced morphology - Eugenio Piasini
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Name Size Revision Age Author Comment
210710_C1_attenuation_fit.png 42.3 KB 631f457e almost 13 years Eugenio Piasini Added two new scripts to better reproduce figur...
attenuation.py 4.95 KB 3080441e almost 13 years Eugenio Piasini Minor: removed superfluous line.
attenuation_dend_to_soma.py 4.37 KB 631f457e almost 13 years Eugenio Piasini Added two new scripts to better reproduce figur...
attenuation_dend_to_soma_fit.py 2.12 KB 631f457e almost 13 years Eugenio Piasini Added two new scripts to better reproduce figur...
attenuation_fit.py 3.38 KB 4d768b43 almost 13 years Eugenio Piasini Minor fitting and plotting adjustments.
fi_comparison.py 1.95 KB f920ef97 almost 13 years Eugenio Piasini Added scripts for simulating and plotting an F-...
fi_plot.py 646 Bytes 575383cc almost 13 years Eugenio Piasini Adjusted spike detection threshold to avoid pic...

Latest revisions

# Date Author Comment
631f457e 21 Sep 2012 15:06 Eugenio Piasini

Added two new scripts to better reproduce figure 3C in Vervaeke2012.

Koen clarified via email that the cell being tested was 210710_C1,
that the attenuation was measured over an apical dendrite (one that he
could have pathced during the experiments), and that it wasn't...
3080441e 21 Sep 2012 14:53 Eugenio Piasini

Minor: removed superfluous line.
4d768b43 20 Sep 2012 16:31 Eugenio Piasini

Minor fitting and plotting adjustments.
36e32302 20 Sep 2012 12:58 Eugenio Piasini

Added a (0,1) point in attenuation fit because of normalisation.
32ded58d 18 Sep 2012 17:41 Eugenio Piasini

Revert "Begun importing other version of detailed morphology GoC."

This reverts commit be055a8cbbf8955c1fc67608f7be31bddc890804.
be055a8c 18 Sep 2012 17:10 Eugenio Piasini

Begun importing other version of detailed morphology GoC.
3d50f15c 18 Sep 2012 15:41 Eugenio Piasini

Varying the number of stimulation points on the detailed dendrites.

Still fairly hard-coded, but at least I now have more than 3 points for
the exponential fit on the detailed morphology.
a1363158 14 Sep 2012 17:21 Eugenio Piasini

Removed recording of superfluous data during simulations.
c2c23cff 14 Sep 2012 16:50 Eugenio Piasini

Scripts seem to be working fine.

Attenuation seems to match between the two models
(at least with the 4-5-6 dendrite on the reduced
morphology and a specific choice of compartments
on the detailed one), but they both seem to give
different results than those in the paper.
23e72a77 14 Sep 2012 14:50 Eugenio Piasini

Tidied up the code.

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