Wiki » History » Version 2
Boris Marin, 30 Apr 2014 14:58
| 1 | 1 | Boris Marin | L5 Pyramidal Neuron Almog and Korngreen (2014) |
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| 2 | 1 | Boris Marin | ============================================== |
| 3 | 1 | Boris Marin | |
| 4 | 1 | Boris Marin | Model description |
| 5 | 1 | Boris Marin | ----------------- |
| 6 | 1 | Boris Marin | |
| 7 | 1 | Boris Marin | This model originally appeared in \*Almog M, Korngreen A (2014)\* A Quantitative Description of Dendritic Conductances and Its Application to Dendritic Excitation in Layer 5 Pyramidal Neurons [J Neurosci 34(1):1](http://www.jneurosci.org/content/34/1/182). |
| 8 | 1 | Boris Marin | |
| 9 | 1 | Boris Marin | The relevant *neuron* files can be downloaded from [modelDB](http://senselab.med.yale.edu/modeldb/ShowModel.asp?model=151825). |
| 10 | 1 | Boris Marin | |
| 11 | 1 | Boris Marin | Conversion to NeuroML |
| 12 | 1 | Boris Marin | --------------------- |
| 13 | 1 | Boris Marin | |
| 14 | 1 | Boris Marin | We are currently (as of Jan/2014) converting the original model to NeuroML. Most *.mod* mechanisms can be mapped to [ChannelML](http://neuroml.org/NeuroMLValidator/Transform.jsp?localFile=NeuroMLFiles/Schemata/v1.8.1/Level2/ChannelML_v1.8.1.xsd&xslFile=NeuroMLFiles/Schemata/XSD_Readable.xsl) with exception of the Calcium mechanisms described in terms of the [GHK](http://en.wikipedia.org/wiki/GHK_flux_equation) formalism. These latter needed to be translated to [NeuroML2](http://www.neuroml.org/neuroml2.php), which supports arbitrary current laws. |
| 15 | 1 | Boris Marin | |
| 16 | 1 | Boris Marin | ### *NeuroConstruct* project |
| 17 | 1 | Boris Marin | |
| 18 | 1 | Boris Marin | The |
| 19 | 1 | Boris Marin | |
| 20 | 1 | Boris Marin | ### Idiosyncrasies in the conversion |
| 21 | 2 | Boris Marin |  |