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Version 2 (Padraig Gleeson, 30 Apr 2014 14:57) → Version 3/8 (Padraig Gleeson, 30 Apr 2014 14:57)
Bluehive and OSB interactions
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Discussion of the options for running models from OSB (and any other models expressed in LEMS/NeuroML2) on the Bluehive hardware being developed in Cambridge.
### Overview of Bluehive system
Information on the current status of the Bluehive system can be found in presentations by [Steve Marsh](http://www.opensourcebrain.org/attachments/download/70/SteveMarsh_HiveMind_Overview_13_5_13.pdf) and [Paul Fox](http://www.opensourcebrain.org/attachments/download/74/Thousands-to-millions_PaulFox.ppt) at the [2013 OSB kickoff meeting](http://www.opensourcebrain.org/projects/osb/wiki/Meetings) …
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### Potential OSB models to test on Bluehive hardware
Some of the potential models on OSB which could be tried out on Bluehive include:
- project:brunel2000
- project:destexhe\_jcns\_2009
(Note these are both PyNN based networks, which could potentiall be scaled up by changing the population size parameters)
- project:grancelllayer
(This is a neuroConstruct based project containing a network of single compartment conductance based neurons. The [Large 3D network](http://www.opensourcebrain.org/embedded/grancelllayer/Large3DNetwork.html) simulation configuration could be used for testing on Bluehive, but would require more testing of the ChannelML ~~\> NeuroML2~~\> LEMS -\> Other formats pathway)
Note that a Google Summer of Code project for the INCF will start soon when a student will be specifically looking at converting large scale cortical models to NeuroML/PyNN and putting them on OSB: http://www.incf.org/gsoc/2013, http://www.google-melange.com/gsoc/project/google/gsoc2013/vitorchaud/14001.
These networks will be exactly the type needed for testing with Bluehive and comparing to other simulators.
More… …
### Libraries which can be used for code generation, testing, etc.
[PyLEMS](https://github.com/LEMS/pylems)
Extended [org.neuroml.export package](https://github.com/NeuroML/org.neuroml.export/tree/master/src/main/java/org/neuroml/export) which exports [VFGEN](http://www.warrenweckesser.net/vfgen/index.html) format, to generate C/C++…
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Discussion of the options for running models from OSB (and any other models expressed in LEMS/NeuroML2) on the Bluehive hardware being developed in Cambridge.
### Overview of Bluehive system
Information on the current status of the Bluehive system can be found in presentations by [Steve Marsh](http://www.opensourcebrain.org/attachments/download/70/SteveMarsh_HiveMind_Overview_13_5_13.pdf) and [Paul Fox](http://www.opensourcebrain.org/attachments/download/74/Thousands-to-millions_PaulFox.ppt) at the [2013 OSB kickoff meeting](http://www.opensourcebrain.org/projects/osb/wiki/Meetings) …
More…
### Potential OSB models to test on Bluehive hardware
Some of the potential models on OSB which could be tried out on Bluehive include:
- project:brunel2000
- project:destexhe\_jcns\_2009
(Note these are both PyNN based networks, which could potentiall be scaled up by changing the population size parameters)
- project:grancelllayer
(This is a neuroConstruct based project containing a network of single compartment conductance based neurons. The [Large 3D network](http://www.opensourcebrain.org/embedded/grancelllayer/Large3DNetwork.html) simulation configuration could be used for testing on Bluehive, but would require more testing of the ChannelML ~~\> NeuroML2~~\> LEMS -\> Other formats pathway)
Note that a Google Summer of Code project for the INCF will start soon when a student will be specifically looking at converting large scale cortical models to NeuroML/PyNN and putting them on OSB: http://www.incf.org/gsoc/2013, http://www.google-melange.com/gsoc/project/google/gsoc2013/vitorchaud/14001.
These networks will be exactly the type needed for testing with Bluehive and comparing to other simulators.
More… …
### Libraries which can be used for code generation, testing, etc.
[PyLEMS](https://github.com/LEMS/pylems)
Extended [org.neuroml.export package](https://github.com/NeuroML/org.neuroml.export/tree/master/src/main/java/org/neuroml/export) which exports [VFGEN](http://www.warrenweckesser.net/vfgen/index.html) format, to generate C/C++…