Introduction¶

This project provides scripts to interact with the metadata from the Computational Neuroscience Ontology in Open Source Brain.

Note: the latest version & documentation for CNO is hosted here.

Listing CNO info in OSB projects¶

To list all the information related to CNO in OSB projects, get a local copy of this repository:

git clone https://github.com/OpenSourceBrain/CNOShowcase.git

and then run the CheckCNOIds.py script:

 python CheckCNOIds.py

This produces a list like the following:

http://opensourcebrain.org/projects/vogelsetal2011 cno_0000015; cno_0000066; cno_0000185

http://opensourcebrain.org/projects/blender-to-neuroml

http://opensourcebrain.org/projects/nc_ca1

http://opensourcebrain.org/projects/nc_superdeep

http://opensourcebrain.org/projects/dbdflymodel

http://opensourcebrain.org/projects/dentategyrus2005

http://opensourcebrain.org/projects/dentate

http://opensourcebrain.org/projects/drosophila-acc-l3-motoneuron-gunay-et-al-2014

http://opensourcebrain.org/projects/fitzhugh-nagumo-fitzhugh-1969

http://opensourcebrain.org/projects/golgi-cell-reduced-morphology-eugenio-piasini

http://opensourcebrain.org/projects/granule-cell-layer-piasini-2014

http://opensourcebrain.org/projects/hindmarshrose1984 cno_0000074

http://opensourcebrain.org/projects/almog-korngreen-pyramidal-neuron cno_0000020

http://opensourcebrain.org/projects/large-scale-model-of-neocortical-slice-in-vitro-exhibiting-persistent-gamma
http://opensourcebrain.org/projects/multicompgrc

http://opensourcebrain.org/projects/multiscale-medium-spiny-neuron-mattioni-and-le-novere

http://opensourcebrain.org/projects/v1networkmodels

http://opensourcebrain.org/projects/farinellaetal_nmdaspikes

http://opensourcebrain.org/projects/nml_net_test

http://opensourcebrain.org/projects/olfactory-bulb

http://opensourcebrain.org/projects/olfactory-bulb-network-model-o-connor-angelo-and-jacob-2012

http://opensourcebrain.org/projects/osbmeeting2013-piasini-and-cantarelli

http://opensourcebrain.org/projects/acnet2 cno_0000020

http://opensourcebrain.org/projects/pyloricnetwork

http://opensourcebrain.org/projects/potjansdiesmann2014

http://opensourcebrain.org/projects/himanshu

http://opensourcebrain.org/projects/larkumetal2009 cno_0000020

http://opensourcebrain.org/projects/test-project-2

http://opensourcebrain.org/projects/test-pyloric-network

http://opensourcebrain.org/projects/testproject

http://opensourcebrain.org/projects/testtest

http://opensourcebrain.org/projects/celegansneuromechanicalgaitmodulation

http://opensourcebrain.org/projects/drosophila_projection_neuron

http://opensourcebrain.org/projects/l5bpyrcellhayetal2011 cno_0000020

http://opensourcebrain.org/projects/pospischiletal2008 cno_0000020

http://opensourcebrain.org/projects/muscle_model

http://opensourcebrain.org/projects/ca1pyramidalcell

http://opensourcebrain.org/projects/celegans

http://opensourcebrain.org/projects/cerebellarnucleusneuron

http://opensourcebrain.org/projects/pinskyrinzelmodel

http://opensourcebrain.org/projects/destexhe_jcns_2009

http://opensourcebrain.org/projects/granulecellvscs

http://opensourcebrain.org/projects/grancelllayer

http://opensourcebrain.org/projects/grancellsolinasetal10

http://opensourcebrain.org/projects/granulecell

http://opensourcebrain.org/projects/grancellrothmanif

http://opensourcebrain.org/projects/izhikevichmodel cno_0000072

http://opensourcebrain.org/projects/mainenetalpyramidalcell cno_0000020

http://opensourcebrain.org/projects/morrislecarmodel cno_0000093

http://opensourcebrain.org/projects/piriformcortexvanier

http://opensourcebrain.org/projects/purkinjecell

http://opensourcebrain.org/projects/rothmanetalkoleetalpyrcell cno_0000020

http://opensourcebrain.org/projects/cerebellargainandtiming

http://opensourcebrain.org/projects/cerebellum--cerebellar-golgi-cell--solinasetal-golgicell

http://opensourcebrain.org/projects/brunel2000

http://opensourcebrain.org/projects/striatalspinyprojectionneuron

http://opensourcebrain.org/projects/thalamocortical

http://opensourcebrain.org/projects/vervaekeetalgolgicellnetwork

http://opensourcebrain.org/projects/tvb_neuroml