Wiki » History » Version 17
Padraig Gleeson, 30 Apr 2014 14:57
1 | 1 | Padraig Gleeson | Introduction |
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2 | 12 | Padraig Gleeson | ============ |
3 | 1 | Padraig Gleeson | |
4 | 16 | Padraig Gleeson | This model of a [striatal spiny projection neuron](http://neurolex.org/wiki/Category:Neostriatum_direct_pathway_spiny_neuron) is in development in GENESIS, but a version is under construction here in NeuroML 2 format. |
5 | 1 | Padraig Gleeson | |
6 | 16 | Padraig Gleeson | Note: the main purpose of this project is to test the scope of NeuroML v2.0, and its ability to encode detailed conductance based models. |
7 | 1 | Padraig Gleeson | |
8 | 16 | Padraig Gleeson | The SSPN model is still in development in GENESIS, but will be added here when it is published. |
9 | 16 | Padraig Gleeson | |
10 | 1 | Padraig Gleeson | Clone the project |
11 | 1 | Padraig Gleeson | ================= |
12 | 1 | Padraig Gleeson | |
13 | 16 | Padraig Gleeson | Note: this project has recently been moved from a [Mercurial](http://mercurial.selenic.com) repository to [GitHub](https://github.com/OpenSourceBrain/StriatalSpinyProjectionNeuron) |
14 | 1 | Padraig Gleeson | |
15 | 17 | Padraig Gleeson | To get a local copy of this project, [install a git client](https://help.github.com/articles/set-up-git) and run: |
16 | 16 | Padraig Gleeson | |
17 | 17 | Padraig Gleeson | `git clone https://github.com/OpenSourceBrain/StriatalSpinyProjectionNeuron.git` |
18 | 1 | Padraig Gleeson | |
19 | 1 | Padraig Gleeson | `cd StriatalSpinyProjectionNeuron/NeuroML2` |
20 | 17 | Padraig Gleeson | |
21 | 17 | Padraig Gleeson | (Alternatively use: `git clone git`github.com:OpenSourceBrain/StriatalSpinyProjectionNeuron.git@ if you prefer to use SSH. See [here](https://help.github.com/articles/set-up-git) for more info.) |
22 | 2 | Padraig Gleeson | |
23 | 2 | Padraig Gleeson | Test the project |
24 | 12 | Padraig Gleeson | ================ |
25 | 2 | Padraig Gleeson | |
26 | 3 | Padraig Gleeson | Install NeuroML 2/libNeuroML, see [here](http://www.neuroml.org/neuroml2.php#libNeuroML). Remember to set the **NML2\_HOME** environment variable. |
27 | 2 | Padraig Gleeson | |
28 | 4 | Padraig Gleeson | Run the example cell with: |
29 | 4 | Padraig Gleeson | |
30 | 4 | Padraig Gleeson | `nml2 Test_lems.xml` |
31 | 8 | Padraig Gleeson | |
32 | 10 | Padraig Gleeson | Also try the other example. Note more work is needed to get this behaving like a real SSN, but the channels can be tested with this example: |
33 | 8 | Padraig Gleeson | |
34 | 8 | Padraig Gleeson | `nml2 LemsSim.xml` |
35 | 8 | Padraig Gleeson | |
36 | 15 | Padraig Gleeson | See plots of this example below: |
37 | 8 | Padraig Gleeson | |
38 | 15 | Padraig Gleeson | ![](MSSN.png) |