Wiki » History » Version 17
Padraig Gleeson, 30 Apr 2014 14:57
| 1 | 1 | Padraig Gleeson | Introduction |
|---|---|---|---|
| 2 | 12 | Padraig Gleeson | ============ |
| 3 | 1 | Padraig Gleeson | |
| 4 | 16 | Padraig Gleeson | This model of a [striatal spiny projection neuron](http://neurolex.org/wiki/Category:Neostriatum_direct_pathway_spiny_neuron) is in development in GENESIS, but a version is under construction here in NeuroML 2 format. |
| 5 | 1 | Padraig Gleeson | |
| 6 | 16 | Padraig Gleeson | Note: the main purpose of this project is to test the scope of NeuroML v2.0, and its ability to encode detailed conductance based models. |
| 7 | 1 | Padraig Gleeson | |
| 8 | 16 | Padraig Gleeson | The SSPN model is still in development in GENESIS, but will be added here when it is published. |
| 9 | 16 | Padraig Gleeson | |
| 10 | 1 | Padraig Gleeson | Clone the project |
| 11 | 1 | Padraig Gleeson | ================= |
| 12 | 1 | Padraig Gleeson | |
| 13 | 16 | Padraig Gleeson | Note: this project has recently been moved from a [Mercurial](http://mercurial.selenic.com) repository to [GitHub](https://github.com/OpenSourceBrain/StriatalSpinyProjectionNeuron) |
| 14 | 1 | Padraig Gleeson | |
| 15 | 17 | Padraig Gleeson | To get a local copy of this project, [install a git client](https://help.github.com/articles/set-up-git) and run: |
| 16 | 16 | Padraig Gleeson | |
| 17 | 17 | Padraig Gleeson | `git clone https://github.com/OpenSourceBrain/StriatalSpinyProjectionNeuron.git` |
| 18 | 1 | Padraig Gleeson | |
| 19 | 1 | Padraig Gleeson | `cd StriatalSpinyProjectionNeuron/NeuroML2` |
| 20 | 17 | Padraig Gleeson | |
| 21 | 17 | Padraig Gleeson | (Alternatively use: `git clone git`github.com:OpenSourceBrain/StriatalSpinyProjectionNeuron.git@ if you prefer to use SSH. See [here](https://help.github.com/articles/set-up-git) for more info.) |
| 22 | 2 | Padraig Gleeson | |
| 23 | 2 | Padraig Gleeson | Test the project |
| 24 | 12 | Padraig Gleeson | ================ |
| 25 | 2 | Padraig Gleeson | |
| 26 | 3 | Padraig Gleeson | Install NeuroML 2/libNeuroML, see [here](http://www.neuroml.org/neuroml2.php#libNeuroML). Remember to set the **NML2\_HOME** environment variable. |
| 27 | 2 | Padraig Gleeson | |
| 28 | 4 | Padraig Gleeson | Run the example cell with: |
| 29 | 4 | Padraig Gleeson | |
| 30 | 4 | Padraig Gleeson | `nml2 Test_lems.xml` |
| 31 | 8 | Padraig Gleeson | |
| 32 | 10 | Padraig Gleeson | Also try the other example. Note more work is needed to get this behaving like a real SSN, but the channels can be tested with this example: |
| 33 | 8 | Padraig Gleeson | |
| 34 | 8 | Padraig Gleeson | `nml2 LemsSim.xml` |
| 35 | 8 | Padraig Gleeson | |
| 36 | 15 | Padraig Gleeson | See plots of this example below: |
| 37 | 8 | Padraig Gleeson | |
| 38 | 15 | Padraig Gleeson |  |