Wiki » History » Version 18
Padraig Gleeson, 30 Apr 2014 14:57
1 | 1 | Padraig Gleeson | Introduction |
---|---|---|---|
2 | 18 | Padraig Gleeson | ------------ |
3 | 1 | Padraig Gleeson | |
4 | 16 | Padraig Gleeson | This model of a [striatal spiny projection neuron](http://neurolex.org/wiki/Category:Neostriatum_direct_pathway_spiny_neuron) is in development in GENESIS, but a version is under construction here in NeuroML 2 format. |
5 | 1 | Padraig Gleeson | |
6 | 16 | Padraig Gleeson | Note: the main purpose of this project is to test the scope of NeuroML v2.0, and its ability to encode detailed conductance based models. |
7 | 1 | Padraig Gleeson | |
8 | 16 | Padraig Gleeson | The SSPN model is still in development in GENESIS, but will be added here when it is published. |
9 | 1 | Padraig Gleeson | |
10 | 18 | Padraig Gleeson | ### Clone the project |
11 | 1 | Padraig Gleeson | |
12 | 1 | Padraig Gleeson | Note: this project has recently been moved from a [Mercurial](http://mercurial.selenic.com) repository to [GitHub](https://github.com/OpenSourceBrain/StriatalSpinyProjectionNeuron) |
13 | 16 | Padraig Gleeson | |
14 | 18 | Padraig Gleeson | To get a local copy of this project, [install Git](http://www.opensourcebrain.org/projects/gitintro/wiki/Wiki) and run: |
15 | 16 | Padraig Gleeson | |
16 | 18 | Padraig Gleeson | git clone https://github.com/OpenSourceBrain/StriatalSpinyProjectionNeuron.git |
17 | 18 | Padraig Gleeson | cd StriatalSpinyProjectionNeuron/NeuroML2 |
18 | 1 | Padraig Gleeson | |
19 | 17 | Padraig Gleeson | (Alternatively use: `git clone git`github.com:OpenSourceBrain/StriatalSpinyProjectionNeuron.git@ if you prefer to use SSH. See [here](https://help.github.com/articles/set-up-git) for more info.) |
20 | 2 | Padraig Gleeson | |
21 | 18 | Padraig Gleeson | ### Test the project |
22 | 12 | Padraig Gleeson | |
23 | 2 | Padraig Gleeson | Install NeuroML 2/libNeuroML, see [here](http://www.neuroml.org/neuroml2.php#libNeuroML). Remember to set the **NML2\_HOME** environment variable. |
24 | 2 | Padraig Gleeson | |
25 | 4 | Padraig Gleeson | Run the example cell with: |
26 | 4 | Padraig Gleeson | |
27 | 18 | Padraig Gleeson | nml2 Test\_lems.xml |
28 | 8 | Padraig Gleeson | |
29 | 10 | Padraig Gleeson | Also try the other example. Note more work is needed to get this behaving like a real SSN, but the channels can be tested with this example: |
30 | 8 | Padraig Gleeson | |
31 | 18 | Padraig Gleeson | nml2 LemsSim.xml |
32 | 8 | Padraig Gleeson | |
33 | 15 | Padraig Gleeson | See plots of this example below: |
34 | 8 | Padraig Gleeson | |
35 | 15 | Padraig Gleeson | ![](MSSN.png) |