Wiki » History » Version 5
Vitor Chaud, 30 Apr 2014 14:57
| 1 | 1 | Vitor Chaud | Model overview |
|---|---|---|---|
| 2 | 2 | Vitor Chaud | ============== |
| 3 | 1 | Vitor Chaud | |
| 4 | 4 | Vitor Chaud | [Vogels et al 2011](http://www.sciencemag.org/content/334/6062/1569.short) provides an extension of the model described in [Vogels and Abbott 2005](http://www.jneurosci.org/content/25/46/10786.short) mainly in order to evaluate the role of inhibitory synapse plasticity in recovering an asynchronous network state after a manifestation of some memory pattern (i.e., highly correlated activity of some neuron group). |
| 5 | 4 | Vitor Chaud | |
| 6 | 5 | Vitor Chaud | A brief video illustrating model features can be found [here](http://lcn.epfl.ch/~vogels/index_movie.html). |
| 7 | 5 | Vitor Chaud | |
| 8 | 1 | Vitor Chaud | Downloading and running a simulation |
| 9 | 1 | Vitor Chaud | ==================================== |
| 10 | 1 | Vitor Chaud | |
| 11 | 5 | Vitor Chaud | To get local clone of this project [Install Git](http://www.opensourcebrain.org/projects/gitintro/wiki/Wiki), go to the directory in which the project will be cloned and type: |
| 12 | 1 | Vitor Chaud | |
| 13 | 1 | Vitor Chaud | > git clone https://github.com/OpenSourceBrain/VogelsEtAl2011.git |
| 14 | 1 | Vitor Chaud | |
| 15 | 5 | Vitor Chaud | In order to install PyNN see http://neuralensemble.org/trac/PyNN/wiki/Installation. Make sure to use the latest v0.8 version from [GitHub](https://github.com/NeuralEnsemble/PyNN), which includes the required Vogels2011Rule synapse. Note: NEURON is the only supported simulator for this model at the moment. |
| 16 | 5 | Vitor Chaud | |
| 17 | 5 | Vitor Chaud | Go to the PyNN subdirectory: |
| 18 | 5 | Vitor Chaud | |
| 19 | 1 | Vitor Chaud | > cd VogelsEtAl2011/PyNN |
| 20 | 1 | Vitor Chaud | |
| 21 | 1 | Vitor Chaud | To run a simulation type: |
| 22 | 1 | Vitor Chaud | |
| 23 | 1 | Vitor Chaud | > python vogelsEtAl2011.py neuron |
| 24 | 5 | Vitor Chaud | |
| 25 | 5 | Vitor Chaud | Version of the project |
| 26 | 5 | Vitor Chaud | ====================== |
| 27 | 5 | Vitor Chaud | |
| 28 | 5 | Vitor Chaud | A Matlab code using the original model implementation can be found [here](http://senselab.med.yale.edu/ModelDB/ShowModel.asp?model=143751). |
| 29 | 5 | Vitor Chaud | |
| 30 | 5 | Vitor Chaud | The project described here is still under development and NEURON is the only supported simulator for this model at the moment. |