Merge pull request #20 from OpenSourceBrain/test_pynn3
Add export of new PyNN to NeuroML
Adding colours and 3D structure to network
Initial export from new PyNN version to NeuroML
Merge pull request #19 from OpenSourceBrain/test_pynn3
Latest PyNN version updated to be tested with latest libraries
Merge branch 'development' into test_pynn3
Adds saving of spikes and v, and tests on spike times
Update GHA versions
Regenerated image
Merge branch 'master' into test_pynn3
Update gha file
Merge pull request #18 from OpenSourceBrain/development
Test more nest versions
Test more nest
Merge pull request #17 from OpenSourceBrain/development
Updates to PyNN, PyNEST & NEST SLI to work with NEST 3 & PyNN v0.10.1
Merge branch 'development' of github.com:OpenSourceBrain/PotjansDiesmann2014 into development
Loosening more tolerances due to different firing rates when run on mac/linux
Loosen tolerances on nest sli versiion, as differences in spike times between mac and linux
Test on py3.10 also
Merge branch 'master' into development
Update omv-ci.yml
Update README.md
Merge pull request #16 from OpenSourceBrain/pynest_update
Pynest & nest sli updates
Merge pull request #15 from apdavison/alt-pyNN
A new version of the PyNN implementation, closely based on the PyNEST…
Remove versions no longer supported
Regenerated comparison figure
Merge branch 'master' into pynest_update
Add script to plot spike rates used in tests on different versions
Add GHA file
Update to latest from nest main repo
Merge pull request #14 from OpenSourceBrain/test_nestsli
Updates to latest nest sli version
Update pynn tests for N_scaling=0.1 and K_scaling=0.1
Update tests/rates for nest 3 on linux
Times changed for linux nest 3
Updated to latest nest sli version from main nest repo
Add spike time tests
Test run_microcircuit.py
Remove change to example.py
Merge branch 'development' into pynest_update
Use: pip install 'numpy<=1.23.0' # see https://github.com/OpenSourceBrain/osb-model-validation/issues/91
Merge pull request #11 from jhnnsnk/pynest_refactor
Pynest refactor
Test this branch
More updated times for latest pynn
Update spike rates for latest pynn/nest
Just py3.9
Test py3.8 also
Not specific version pynest
Fix reference to NEST version
Merge branch 'pynest_refactor' of github.com:jhnnsnk/PotjansDiesmann2014 into pynest_refactor
Add comment about NEST version in README
Update microcircuit files to NEST 3.1
Rename main.yml to omv-ci.yml
Update main.yml
Create main.yml
Update tests to pass with slightly different PyNN NEST spike times on py2/py3
Py3 fix
Test bionic
Update make_tests.sh
Fix measurement of presimulation time
Add copy statement to README
Update PyNEST to refactored version on nest-simulator master
Update .travis.yml
Update Comparison.md
changed way the figure is included in README.md
copied description from OSB into README.md
Adding 3D distribution of cells in column and exportability to nml
Remove PyNNTextIO; add test comparing PyNN to PyNEST rates
Ensuring reproducible pynn sim
Extra data save options
Initial test on PyNN
Slightly lower tolerance for nest 2.12 on omv
More tests
Improved test
Rescaled tests
Initial test on pynest
Use readme from https://github.com/nest/nest-simulator/tree/master/pynest/examples/Potjans_2014
Initial test on rates
Fixed plotting on PyNN results
Updated PyNEST scripts from https://github.com/nest/nest-simulator/tree/master/pynest/examples/Potjans_2014
Update Nest SLI comparison
Updateing code to latest from https://github.com/nest/nest-simulator/tree/master/examples/nest/Potjans_2014
Adding licence info
Fixes #5
add osb.yml
sample update
sample
A new version of the PyNN implementation, closely based on the PyNEST implementation to allow easier comparison
Initial PyNN image
PyNest plots