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Chaitanya Chintaluri, 30 Apr 2014 14:57

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Neocortical models in the Open Source Brain repository
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### Introduction
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This page will be updated during the [2013 OSB Hackathon](http://www.opensourcebrain.org/projects/osb/wiki/Meetings).
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See also the page on [[Priorities]].
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### Cell models
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#### Individual cell models
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##### Generic cortical pyramidal cell
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[Pyramidal cells review](http://www.nature.com/nrn/journal/v9/n3/full/nrn2286.html) by Nelson Spruston
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project:pospischiletal2008 (single compartment, conductance based; Regular Spiking (RS) neurons & Intrinsically Bursting (IB) neurons)
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project:acnet2 is a network model of the thalamorecipient layer (IV) of primary auditory cortex (AI), and consists of 2 populations, pyramidal cells and basket cell interneurons.
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project:piriformcortexvanier
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##### Layer 2/3 Pyramidal cell
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project:thalamocortical (Fast Regular Bursting & Regular Spiking)
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##### Layer 4 Spiny Stellate cell
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project:thalamocortical
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##### Layer 5 Pyramidal cell
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project:mainenetalpyramidalcell:
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project:rothmanetalkoleetalpyrcell
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project:thalamocortical (Intrinsically bursting & Regular Spiking)
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project:l5bpyrcellhayetal2011
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There is a \*dedicated page on modelling L5 cells [here](/projects/l5pyramidalcellmodels/wiki*).
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##### Layer 6 Pyramidal cell
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project:thalamocortical
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##### Interneurons
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project:thalamocortical (Superficial & Deep Basket, Axo-axonic & LTS interneurons)
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project:acnet2 is a network model of the thalamorecipient layer (IV) of primary auditory cortex (AI), and consists of 2 populations, pyramidal cells and basket cell interneurons.
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project:pospischiletal2008 (Fast Spiking (FS) neurons)
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#### Channel Properties
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#### Morphology
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#### Nomenclature
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It is important to have a consistent naming in the models of the cells and channels. Although these are not currently adopted, they are advised. A standard naming helps in making models interchangeable and easily testable. There is no consensus yet on naming of individual compartments in a cell model. [Discuss]
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[Petilla terminology](http://www.ncbi.nlm.nih.gov/pubmed/18568015) for nomenclature of features of GABAergic interneurons of the cerebral cortex.
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[Channelpedia](http://channelpedia.epfl.ch/ionchannels) For ion channel names.
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### Network models
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#### Abstract cortical networks
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project:izhikevichmodel
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project:vogelsetal2011
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project:destexhe\_jcns\_2009
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project:brunel2000
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#### Detailed network models
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project:thalamocortical
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project:acnet2
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See the page on [[Modelling the thalamocortical loop]]