Converting NeuroML2/LEMS to & from SBML¶

Most of the interactions between SBML and LEMS/NeuroML showcased here are enabled by:

• The SBML to LEMS import function in: org.neuroml.importer

• The LEMS/NeuroML to SBML export function in: org.neuroml.export

Note these features can be accessed easily with the pyNeuroML tool. For example:

• Load LEMSFile.xml using pyNeuroML, and convert it to SBML format:

   pynml LEMSFile.xml -sbml
  

• Load LEMSFile.xml using pyNeuroML, and convert it to SBML format with a SED-ML specification for the experiment:

   pynml LEMSFile.xml -sbml-sedml
  

• Load SBMLFile.sbml using jSBML, and convert it to LEMS format using values for duration & dt in ms

  pynml -sbml-import SBMLFile.sbml duration dt
  

See also https://github.com/ModECI/modelspec/blob/main/examples/COMBINE.md.