Wiki » History » Version 15
Padraig Gleeson, 30 Apr 2014 14:57
1 | 1 | Padraig Gleeson | Introduction |
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2 | 12 | Padraig Gleeson | ============ |
3 | 1 | Padraig Gleeson | |
4 | 2 | Padraig Gleeson | This model of a [striatal spiny projection neuron](http://neurolex.org/wiki/Category:Neostriatum_medium_spiny_neuron#tab=Basic) is in development in GENESIS, but a version is under construction here in NeuroML 2 format. |
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6 | 12 | Padraig Gleeson | **Note: the main purpose of this project is to test the scope of NeuroML v2.0, and its ability to encode detailed conductance based models. The SSPN model is still in development in GENESIS, but will be added here when it is published.** |
7 | 12 | Padraig Gleeson | |
8 | 1 | Padraig Gleeson | Clone the project |
9 | 12 | Padraig Gleeson | ================= |
10 | 2 | Padraig Gleeson | |
11 | 13 | Padraig Gleeson | To get a local copy of this project clone with [Mercurial](http://mercurial.selenic.com): |
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13 | 11 | Padraig Gleeson | `hg clone http://www.neuroconstruct.org/hg/osb/models/basal_ganglia/medium_striatal_neuron/StriatalSpinyProjectionNeuron` |
14 | 13 | Padraig Gleeson | `cd StriatalSpinyProjectionNeuron/NeuroML2` |
15 | 2 | Padraig Gleeson | |
16 | 2 | Padraig Gleeson | Test the project |
17 | 12 | Padraig Gleeson | ================ |
18 | 2 | Padraig Gleeson | |
19 | 3 | Padraig Gleeson | Install NeuroML 2/libNeuroML, see [here](http://www.neuroml.org/neuroml2.php#libNeuroML). Remember to set the **NML2\_HOME** environment variable. |
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21 | 4 | Padraig Gleeson | Run the example cell with: |
22 | 4 | Padraig Gleeson | |
23 | 4 | Padraig Gleeson | `nml2 Test_lems.xml` |
24 | 8 | Padraig Gleeson | |
25 | 10 | Padraig Gleeson | Also try the other example. Note more work is needed to get this behaving like a real SSN, but the channels can be tested with this example: |
26 | 8 | Padraig Gleeson | |
27 | 8 | Padraig Gleeson | `nml2 LemsSim.xml` |
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29 | 15 | Padraig Gleeson | See plots of this example below: |
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31 | 15 | Padraig Gleeson | ![](MSSN.png) |