Golgi cell reduced morphology - Eugenio Piasini
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Name Size Revision Age Author Comment
ExcCell.nml 3.48 KB 705f351b almost 13 years Eugenio Piasini Actual reference morphologies.
GJGolgi_Reduced.nml 12.2 KB c2c23cff almost 13 years Eugenio Piasini Scripts seem to be working fine. Attenuation s...
Golgi_210710_C1.nml 511 KB c2c23cff almost 13 years Eugenio Piasini Scripts seem to be working fine. Attenuation s...
Golgi_240710_C0.nml 737 KB 93ddc84c almost 13 years Eugenio Piasini Included the 240710_C0 model, as an alternative...
Golgi_CML.nml 9.58 KB 705f351b almost 13 years Eugenio Piasini Actual reference morphologies.
README 1.21 KB 10895128 almost 13 years Eugenio Piasini Initial commit: nC project.

Latest revisions

# Date Author Comment
93ddc84c 20 Sep 2012 11:29 Eugenio Piasini

Included the 240710_C0 model, as an alternative to 210710_C1.

Imported the model and modified the relevant simulation/analysis
scripts. Note that setting sodium and potassium reversal potential over
the whole cell crashes neuroConstruct for some reason.
c2c23cff 14 Sep 2012 16:50 Eugenio Piasini

Scripts seem to be working fine.

Attenuation seems to match between the two models
(at least with the 4-5-6 dendrite on the reduced
morphology and a specific choice of compartments
on the detailed one), but they both seem to give
different results than those in the paper.
ab253e75 13 Sep 2012 15:57 Eugenio Piasini

Leak conductance on both models has been set to 6.67e-10mSum-2,
as per supplementary information (page 3) in Vervaeke2012, where
15kOhmcm2 was reported from unpublished observations.

Also, fixed the (wrong) number of internal divisions of a segment.
e1320be9 13 Sep 2012 13:39 Eugenio Piasini

Still playing around with reduced morphology. Added an axon.
18f23cd8 12 Sep 2012 17:46 Eugenio Piasini

Playing around with morphology to see effects on FI and attenuation.
f920ef97 12 Sep 2012 15:42 Eugenio Piasini

Added scripts for simulating and plotting an F-I curve comparison.
dce3c5dd 12 Sep 2012 13:34 Eugenio Piasini

Fixed a remaining issue with the detailed morphology cell.

Note that I turned off again all Na channels.

Now pure NeuroML morphology read/write seems to be working fine,
except that it removes property elements tagged 'comment'.
This will need to be fixed in neuroConstruct, but doesn't have...
7a50584e 12 Sep 2012 11:28 Eugenio Piasini

Reverted morphologically-detailed cell model back to its original form
to fix some issues (namely, loss of 'number of internal divisions'
properties) generated when doing NeuroML write/read with older versions
of neuroConstruct.
cc5e5cec 12 Sep 2012 11:12 Eugenio Piasini

Modified leak conductance to match what Koen did.
f878dab0 11 Sep 2012 13:38 Eugenio Piasini

Comparing attenuation in the original (Koen's) model and in my reduced one.

Important: to get to a meaningful comparison,
I'm tweaking the spatial discretisation of the original model.

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