Golgi cell reduced morphology - Eugenio Piasini
User Project
Gjgolgi reducedmorph Gjgolgi reducedmorph Gjgolgi reducedmorph
Note The source for this project is hosted on GitHub
Branch
Graphs News feed

root / neuroConstruct @ add_C0

Name Size Revision Age Author Comment
  cellMechanisms 18f23cd8 almost 13 years Eugenio Piasini Playing around with morphology to see effects o...
  cellProcesses 7860329c almost 13 years Eugenio Piasini Trying to script an attenuation-length analysis...
  dataSets 7860329c almost 13 years Eugenio Piasini Trying to script an attenuation-length analysis...
  morphologies 93ddc84c almost 13 years Eugenio Piasini Included the 240710_C0 model, as an alternative...
  oldCP 10895128 almost 13 years Eugenio Piasini Initial commit: nC project.
  scripts 93ddc84c almost 13 years Eugenio Piasini Included the 240710_C0 model, as an alternative...
GJGolgi_ReducedMorph.ncx 26.4 KB 93ddc84c almost 13 years Eugenio Piasini Included the 240710_C0 model, as an alternative...

Latest revisions

# Date Author Comment
93ddc84c 20 Sep 2012 11:29 Eugenio Piasini

Included the 240710_C0 model, as an alternative to 210710_C1.

Imported the model and modified the relevant simulation/analysis
scripts. Note that setting sodium and potassium reversal potential over
the whole cell crashes neuroConstruct for some reason.
32ded58d 18 Sep 2012 17:41 Eugenio Piasini

Revert "Begun importing other version of detailed morphology GoC."

This reverts commit be055a8cbbf8955c1fc67608f7be31bddc890804.
be055a8c 18 Sep 2012 17:10 Eugenio Piasini

Begun importing other version of detailed morphology GoC.
3d50f15c 18 Sep 2012 15:41 Eugenio Piasini

Varying the number of stimulation points on the detailed dendrites.

Still fairly hard-coded, but at least I now have more than 3 points for
the exponential fit on the detailed morphology.
a1363158 14 Sep 2012 17:21 Eugenio Piasini

Removed recording of superfluous data during simulations.
c2c23cff 14 Sep 2012 16:50 Eugenio Piasini

Scripts seem to be working fine.

Attenuation seems to match between the two models
(at least with the 4-5-6 dendrite on the reduced
morphology and a specific choice of compartments
on the detailed one), but they both seem to give
different results than those in the paper.
23e72a77 14 Sep 2012 14:50 Eugenio Piasini

Tidied up the code.
ed62ce34 13 Sep 2012 16:14 Eugenio Piasini

Working on the simulation/analysis scripts.

Added plotting of dependance of maximum somatic response amplitude
on distance of stimulation along the dendritic tree.
ab253e75 13 Sep 2012 15:57 Eugenio Piasini

Leak conductance on both models has been set to 6.67e-10mSum-2,
as per supplementary information (page 3) in Vervaeke2012, where
15kOhmcm2 was reported from unpublished observations.

Also, fixed the (wrong) number of internal divisions of a segment.
e1320be9 13 Sep 2012 13:39 Eugenio Piasini

Still playing around with reduced morphology. Added an axon.

View revisions