Wiki » History » Version 11
Padraig Gleeson, 16 Jun 2014 15:43
| 1 | 11 | Padraig Gleeson | NEURON tools for interacting with NeuroML |
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| 2 | 11 | Padraig Gleeson | ----------------------------- |
| 3 | 1 | Padraig Gleeson | |
| 4 | 3 | Padraig Gleeson | This page is in development as a central resource for all information on translating NEURON models to & from NeuroML. |
| 5 | 1 | Padraig Gleeson | |
| 6 | 3 | Padraig Gleeson | ### Native import/export of NeuroML from/to NEURON |
| 7 | 1 | Padraig Gleeson | |
| 8 | 11 | Padraig Gleeson | See http://www.neuroml.org/neuron/tools.php. |
| 9 | 8 | Padraig Gleeson | |
| 10 | 11 | Padraig Gleeson | This info (& related scripts) will eventually be updated & moved to this repository/wiki. |
| 11 | 11 | Padraig Gleeson | |
| 12 | 1 | Padraig Gleeson | ### Converting NMODL files into ChannelML using neuroConstruct |
| 13 | 10 | Padraig Gleeson | |
| 14 | 11 | Padraig Gleeson | http://www.neuroconstruct.org/docs/importneuron.html#Converting+mod+file%2FGENESIS+script+channels+into+ChannelML. |
| 15 | 1 | Padraig Gleeson | |
| 16 | 1 | Padraig Gleeson | ### A tool for creating NEURON scripts from NeuroML 2 models |
| 17 | 3 | Padraig Gleeson | |
| 18 | 11 | Padraig Gleeson | jNeuroML can be used to convert NeuroML2/LEMS models to NEURON, see https://github.com/NeuroML/jNeuroML. |
| 19 | 1 | Padraig Gleeson | |
| 20 | 1 | Padraig Gleeson | Use: |
| 21 | 1 | Padraig Gleeson | |
| 22 | 11 | Padraig Gleeson | ./jnml MyLEMSModel.xml -neuron |
| 23 | 1 | Padraig Gleeson | |
| 24 | 11 | Padraig Gleeson | Note: try the **development** version (use: *python getNeuroML.py development*) for the most up to date export of NEURON! |
| 25 | 8 | Padraig Gleeson | |
| 26 | 8 | Padraig Gleeson | ### A utility for generating activation variable plots from generic mod files |
| 27 | 8 | Padraig Gleeson | |
| 28 | 11 | Padraig Gleeson | See https://github.com/OpenSourceBrain/NEURONShowcase/tree/master/HHChannelAnalyser |
| 29 | 8 | Padraig Gleeson | |
| 30 | 8 | Padraig Gleeson |  |