Wiki » History » Version 11
Padraig Gleeson, 16 Jun 2014 15:43
1 | 11 | Padraig Gleeson | NEURON tools for interacting with NeuroML |
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2 | 11 | Padraig Gleeson | ----------------------------- |
3 | 1 | Padraig Gleeson | |
4 | 3 | Padraig Gleeson | This page is in development as a central resource for all information on translating NEURON models to & from NeuroML. |
5 | 1 | Padraig Gleeson | |
6 | 3 | Padraig Gleeson | ### Native import/export of NeuroML from/to NEURON |
7 | 1 | Padraig Gleeson | |
8 | 11 | Padraig Gleeson | See http://www.neuroml.org/neuron/tools.php. |
9 | 8 | Padraig Gleeson | |
10 | 11 | Padraig Gleeson | This info (& related scripts) will eventually be updated & moved to this repository/wiki. |
11 | 11 | Padraig Gleeson | |
12 | 1 | Padraig Gleeson | ### Converting NMODL files into ChannelML using neuroConstruct |
13 | 10 | Padraig Gleeson | |
14 | 11 | Padraig Gleeson | http://www.neuroconstruct.org/docs/importneuron.html#Converting+mod+file%2FGENESIS+script+channels+into+ChannelML. |
15 | 1 | Padraig Gleeson | |
16 | 1 | Padraig Gleeson | ### A tool for creating NEURON scripts from NeuroML 2 models |
17 | 3 | Padraig Gleeson | |
18 | 11 | Padraig Gleeson | jNeuroML can be used to convert NeuroML2/LEMS models to NEURON, see https://github.com/NeuroML/jNeuroML. |
19 | 1 | Padraig Gleeson | |
20 | 1 | Padraig Gleeson | Use: |
21 | 1 | Padraig Gleeson | |
22 | 11 | Padraig Gleeson | ./jnml MyLEMSModel.xml -neuron |
23 | 1 | Padraig Gleeson | |
24 | 11 | Padraig Gleeson | Note: try the **development** version (use: *python getNeuroML.py development*) for the most up to date export of NEURON! |
25 | 8 | Padraig Gleeson | |
26 | 8 | Padraig Gleeson | ### A utility for generating activation variable plots from generic mod files |
27 | 8 | Padraig Gleeson | |
28 | 11 | Padraig Gleeson | See https://github.com/OpenSourceBrain/NEURONShowcase/tree/master/HHChannelAnalyser |
29 | 8 | Padraig Gleeson | |
30 | 8 | Padraig Gleeson | ![](http://www.opensourcebrain.org/attachments/download/115/Selection_251.png) |